Haplotype-aware CNV analysis in scRNA-Seq

Examples of single-cell genomic analysis accelerated with RAPIDS

机器学习算法项目

My blogs and code for machine learning. http://cnblogs.com/pinard

Quantifying metabolism activity at the single-cell resolution

A software package for analyzing snapshots of developmental processes

Cluster single cells and analyze cell clade relationships with colorful visualizations.

Trajectory inference for single-cell RNA-seq

Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile

SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.

Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data

Java utilities for Bioinformatics

GRIDSS: the Genomic Rearrangement IDentification Software Suite

A collection of command line tools for working with sequencing data

Trinity RNA-Seq de novo transcriptome assembly

Efficient pythonic random access to fasta subsequences

Lightweight CLI download accelerator

ChimeraMiner: An Improved Chimeric Read Detection Pipeline and Its Application in Single Cell Sequencing.

Data intensive science for everyone.

Very simple, pure python, BAM file reader

Data&code for Machine-Learning-in-Action by Python3 | 《机器学习实战》数据与Python3源码:cat2:

SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.