Merge pull request lh3#190 from ihaque-freenome/bwa-postalt-fix

Bug/patch: bwa-postalt.js writes invalid output for SAM input that is an exact multiple of 65536 bytes in length
yanyouxin123 · Apr 7, 2018 · e624290 · e624290
2 parents fde1fd7 + 27dd1da
commit e624290
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/bwakit/bwa-postalt.js b/bwakit/bwa-postalt.js
@@ -283,7 +283,7 @@ function bwa_postalt(args)
 	// process SAM
 	var buf2 = [], hla = {};
 	file = args.length - getopt.ind >= 2? new File(args[getopt.ind+1]) : new File();
-	while (file.readline(buf) >= 0) {
+	while (file.readline(buf) > 0) {
 		var m, line = buf.toString();
 
 		if (line.charAt(0) == '@') { // print and then skip the header line