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Commits on Jun 8, 2022

• Fixed bug in makefile

  

  Aleksey Zimin

  committed
  0344713

Commits on May 20, 2022

• Integrate decompression (zlib, bz2) into cpp code and automatic input detection

  cpockrandt

  committed
  aff17fd

Commits on Feb 15, 2019

• Use estimated k-mer count for database build

  fbreitwieser

  committed
  0a14f1d

Commits on Dec 31, 2018

• Fix build and running on OSX

  fbreitwieser

  committed
  02a8070

Commits on Dec 12, 2018

• Build query_taxdb by default

  fbreitwieser

  committed
  8936227

Commits on Dec 11, 2018

• Enable building with clang and without OpenMP on OSX

  fbreitwieser

  committed
  3760f20

Commits on Aug 22, 2018

• Fixed exact counting w/ the help of dnb

  fbreitwieser

  committed
  92de608

Commits on Aug 6, 2018

• Implement exact counting w/ unordered set

  fbreitwieser

  committed
  f2243b6

Commits on Jul 31, 2018

• Add exact counting of k-mers

  fbreitwieser

  committed
  4f5823d

Commits on Dec 15, 2017

• Add -pipe to CXXFLAGS

  fbreitwieser

  committed
  d251e2a

Commits on Dec 14, 2017

• Don't compile header files

  fbreitwieser

  committed
  cab393d

• Don't compile header files

  fbreitwieser

  committed
  f652de7

• Rename .h files to .hpp

  fbreitwieser

  committed
  724c938

• Use proper directory in install script

  fbreitwieser

  committed
  9a00fb6

Commits on Dec 13, 2017

• make clean before install

  fbreitwieser

  committed
  98a29a3

• Fixes for HLL - use Ertl's cardinality by default

  Show description for feffbcd
  fbreitwieser

  committed
  feffbcd

Commits on Dec 12, 2017

• Fixed stupid HLL bug introduced in refactoring

  Show description for a088ac9
  fbreitwieser

  committed
  a088ac9

• Refactored HLL a bit, put implementaion in .cpp

  fbreitwieser

  committed
  bac6129

Commits on Dec 11, 2017

• Merge branch 'master' of https://github.com/fbreitwieser/kraken-hll

  Show description for acfba8e
  fbreitwieser

  committed
  acfba8e

• Switch back to unordered_set for the sparse HLL representation

  Show description for 7e2a5db
  fbreitwieser

  committed
  7e2a5db

Commits on Dec 5, 2017

• Fix report generation when taxonomy ID is not in taxB

  fbreitwieser

  committed
  a9439bf

Commits on Nov 19, 2017

• Add dump_taxdb to default progs, add -Wextra

  fbreitwieser

  committed
  94573d3

Commits on Nov 15, 2017

• Update version messages

  fbreitwieser

  committed
  7a9ee08

Commits on Nov 10, 2017

• Fix Makefile

  fbreitwieser

  committed
  1d37b54

• Fixed HLL bug introduced by using vector for sparse representation

  fbreitwieser

  committed
  10f5998

Commits on Nov 9, 2017

• Fix taxonomy reporting order and percentage

  fbreitwieser

  committed
  53314ae

• Fix gzstream building and licensing

  fbreitwieser

  committed
  93c155f

• Fix gzstream compilation, update on HLL

  fbreitwieser

  committed
  f34f8d4

Commits on Nov 8, 2017

• Merge branch 'master' of https://github.com/fbreitwieser/kraken-hll

  Show description for 4e3cbd3
  fbreitwieser

  committed
  4e3cbd3

Commits on Nov 6, 2017

• Change name to KrakenHLL

  fbreitwieser

  committed
  dd7fc4f

Commits on Nov 5, 2017

• Add environment CPPFLAGS and LDFLAGS

  fbreitwieser

  committed
  7466810

Commits on Oct 25, 2017

• Many small changes to make it working for GCC 4.4 / C++0x

  fbreitwieser

  committed
  970c4ca

Commits on Oct 23, 2017

• Update

  fbreitwieser

  committed
  7d1ab24

Commits on Oct 2, 2017

• Merge branch 'master' of https://github.com/fbreitwieser/kraken-hll

  Show description for 1fc7d59
  fbreitwieser

  committed
  1fc7d59

• Various improvements and fixes for building and classification

  fbreitwieser

  committed
  6e909c1

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