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@LuChenLab

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  • trackplot Public

    trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and full-length sequencing datasets.

    python bioinformatics genomics
    Python 82 11 BSD 3-Clause "New" or "Revised" License Updated Feb 8, 2025

  • perturb_processing Public

    The raw data management and processing scripts used for https://perturbatlas.kratoss.site/ database

    Python 4 BSD 3-Clause "New" or "Revised" License Updated Sep 1, 2024

  • hd_wsi Public

    Forked from impromptuRong/hd_wsi

    customized scripts and dockerfile

    Python Other Updated Aug 28, 2024

  • sra Public

    Go 1 Updated Jul 22, 2024

  • AIgrading Public

    Forked from xi11/AIgrading

    The artificial intelligence-based model ANORAK improves histopathological grading of lung adenocarcinoma

    R MIT License Updated Apr 30, 2024

  • WSI-SDK Public

    Forked from yasohasakii/WSI-SDK

    Toolkit for WSI preprocess, such as resample & zoom, mask, roi selection ect.

    Python MIT License Updated Apr 10, 2024

  • scPDAC Public

    The analysis R and python scripts for single-cell PDAC

    Python Updated Feb 2, 2024

  • NBIA_data_retriever_CLI Public

    command line version of NBIA data retriever

    Go 31 7 Apache License 2.0 Updated Jan 8, 2024

  • transfer Public

    Resumable file transfer tool through sftp, ftp or http.

    Go Updated Dec 6, 2023

  • STIFMaps Public

    Forked from cstashko/STIFMaps
    Python Updated Oct 24, 2023

  • bigSCale2 Public

    Forked from iaconogi/bigSCale2

    Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data

    R Updated Mar 15, 2023

  • pysashimi Public archive

    Pure python scripts to make sashimi plots

    sashimi-plots
    Python 9 3 Apache License 2.0 Updated Mar 10, 2023

  • md5check Public

    Personal used multithreading md5 generator and checkor

    Go Updated Jan 31, 2023

  • scATS Public

    Single-cell ATS identification and quatification

    Python Updated Jan 3, 2023

  • Splice4k Public

    Kotlin Apache License 2.0 Updated Jun 20, 2022

  • nginx_log_viewer Public archive

    a simple fastAPI+ vue + quasar project to handle the nginx log. It's a practice and personal management project

    Python 3 1 Updated Feb 15, 2022

  • igv Public

    A simple igv web for personal usage

    Python Updated Dec 22, 2021

  • mountainClimber Public

    Forked from gxiaolab/mountainClimber
    Python Apache License 2.0 Updated Jan 5, 2021

  • infercc Public

    Vue Updated Dec 21, 2020

  • NanoFG Public

    Forked from SdeBlank/NanoFG

    Third-generation fusion gene detection

    Python GNU General Public License v3.0 Updated Nov 23, 2020

  • REDItools2 Public

    Forked from BioinfoUNIBA/REDItools2

    go version of REDItools. faster && better output

    Python 1 Updated Sep 14, 2020

  • practice_go Public

    gin+vue+elementUI 练手写的小玩意

    gin
    Go 2 Apache License 2.0 Updated Aug 2, 2020

  • BioFormatConverter Public

    一些常见生信文件互相转化工具，发现需求还挺大的，但是现有工具各种有问题，就自己现需要先写吧

    Python Apache License 2.0 Updated Mar 25, 2020

  • CNVnator_docker Public

    Dockerfile Apache License 2.0 Updated Mar 12, 2020

  • mdconvert Public

    HTML Updated Feb 18, 2020

  • NetProphet_2.0 Public

    Forked from BrentLab/NetProphet_2.0

    A “data light” TF-network mapping algorithm using only gene expression and genome sequence data.

    docker-image
    Python MIT License Updated Jan 8, 2020

  • SMRTLink_docker Public

    Docker image of smrtlinks (command line usage only)

    Python Apache License 2.0 Updated Dec 31, 2019

  • bedops4J Public

    Kotlin Updated Sep 19, 2019

  • BISCUIT_SingleCell_IMM_ICML_2016 Public

    Forked from sandhya212/BISCUIT_SingleCell_IMM_ICML_2016

    R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.

    R Updated Mar 7, 2018

  • kcptun_gui_qt5 Public

    A gui of kcptun, base on PyQt5

    Python 3 1 MIT License Updated Jan 25, 2018