Infer Copy Number Variation using Single-cell RNA-Seq Expression Data.

Authors: Timothy Tickle, Itay Tirosh, Brian Haas

For a quick start, explainations on files, usage, and a tutorial please visit the wiki at https://github.com/broadinstitute/inferCNV/wiki

TrinityCTAT

This tool is a part of the TrinityCTAT toolkit focused on leveraging the use of RNA-Seq to better understand cancer transcriptomes. To find out more please visit TrinityCTAT

Citation

Please use the following citation:

Anoop P. Patel et al. Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma. Science. 2014 Jun 20: 1396-1401

This methodology was also used in:

Tirosh I et al.Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq. Science. 2016 Apr 8;352(6282):189-96