Code for filtering, normalizing, parsing and analyzing spatial transcriptomics and spatial proteomics data sets of the murine small intestinal epithelium. This is a collection of core analysis scripts that were used in the manuscript "Spatial discordances between mRNAs and proteins in the intestinal epithelium". For further details don't hesitate to contact yotamharnik
all required tables are provided here. RAW data is avaivlble via GenBank GEO (GSE164746) and ProteomeXchange (PXD024906).
Everythig was done using Matlab R2018b