Skip to content

Code for normalizing, filtering, parsing and analyzing spatial transcriptomics and spatial proteomics of the murine small intestinal epithelium

Notifications You must be signed in to change notification settings

yotamharnik/Spatial_sorting_SI_epithelium

Repository files navigation

Spatial_sorting_SI_epithelium

Code for filtering, normalizing, parsing and analyzing spatial transcriptomics and spatial proteomics data sets of the murine small intestinal epithelium. This is a collection of core analysis scripts that were used in the manuscript "Spatial discordances between mRNAs and proteins in the intestinal epithelium". For further details don't hesitate to contact yotamharnik

all required tables are provided here. RAW data is avaivlble via GenBank GEO (GSE164746) and ProteomeXchange (PXD024906).

Everythig was done using Matlab R2018b

About

Code for normalizing, filtering, parsing and analyzing spatial transcriptomics and spatial proteomics of the murine small intestinal epithelium

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages