write empty .gt file as a placeholder

to suppress error messages from run-bwamem
youchihwang · Dec 21, 2014 · 5aba188 · 5aba188
1 parent 32c4e3f
commit 5aba188
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/bwakit/typeHLA.sh b/bwakit/typeHLA.sh
@@ -15,6 +15,7 @@ fi
 preres="resource-human-HLA"
 root=`dirname $0`
 pre=$1.$2
+touch $pre.gt
 
 if [ ! -s $pre.fq ]; then
 	echo '** Empty input file. Abort!' >&2