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1. gatk gatk Public

   Forked from broadgsa/gatk

   GATK Official Release Repository: contains the core MIT-licensed GATK framework, free for all uses

   Java

2. gatk-protected gatk-protected Public

   Forked from broadgsa/gatk-protected

   GATK Official Release Repository: contains the core MIT-licensed GATK framework, plus "protected" tools restricted to non-commercial use only

   Java

3. PairHMM PairHMM Public

   Forked from MauricioCarneiro/PairHMM

   Optimization of a Haplotype PairHMM class for GPU processing

   C++

4. bio bio Public

   Forked from dotnetbio/bio

   Bioinformatics library for .NET

   C#

5. gatk-protected-1 gatk-protected-1 Public

   Forked from broadinstitute/gatk-protected

   GATK4 development of the license-protected part of the toolkit

   Java

6. picard picard Public

   Forked from broadinstitute/picard

   A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

   Java