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Non-Metric Space Library (NMSLIB): An efficient similarity search library and a toolkit for evaluation of k-NN methods for generic non-metric spaces.
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
A Python package for manipulating 2-dimensional tabular data structures
ThunderSVM: A Fast SVM Library on GPUs and CPUs
PyTorch Extension Library of Optimized Graph Cluster Algorithms
Bayesian haplotype-based genetic polymorphism discovery and genotyping.
The Point Processing Toolkit (pptk) is a Python package for visualizing and processing 2-d/3-d point clouds.
Fast Fourier Transform-accelerated Interpolation-based t-SNE (FIt-SNE)
Home repository for the Regularized Greedy Forest (RGF) library. It includes original implementation from the paper and multithreaded one written in C++, along with various language-specific wrappers.
Developer repository for ViennaCL. Visit http://viennacl.sourceforge.net/ for the latest releases.
Genetic multiplexing of barcoded single cell RNA-seq
Pipeline for initial analysis of droplet-based single-cell RNA-seq data
A pipeline for analyzing DNA methylation data from bisulfite sequencing.
Scalable analysis of large high-dimensional data
A toolkit for QC and visualization of ATAC-seq results.
B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction
R Package: Parallel Distance Matrix Computation using Multiple Threads
An experimental GPU accelerated implementation of ForceAtlas2
A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxilary tools
Parallel opt-SNE implementation with Python wrapper
Big data Regression for predicting DNase I hypersensitivity
Howto and implementation documentation
Swift Neighbor Embedding of Sparse Stochastic Graphs
Absolve antibody variable domain sequence analysis
Regulatory networks with Direct Information