DO NOT CHECK OUT THESE FILES FROM GITHUB UNLESS YOU KNOW WHAT YOU ARE DOING. (See below.)

RNA-seq aligner

TCR and BCR assembly from RNA-seq data

The OpenCL ICD Loader project.

Efficient genotyping bi-allelic SNPs on single cells

Tools for working with BUS files

Fast covariance, correlation, and cosine similarity.

V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data