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crazyhottommy / DNA-seq-analysis

DNA sequencing analysis notes from Ming Tang

Shell 142 61 Updated Mar 26, 2023

igordot / sns

Analysis pipelines for genomic sequencing data

Shell 64 28 Updated Sep 30, 2024

cellgeni / STARsolo

wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq

Shell 45 5 Updated Sep 25, 2024

slowkow / picardmetrics

🚦 Run Picard on BAM files and collate 90 metrics into one file.

Shell 39 7 Updated Sep 27, 2017

ShichenXie / dstudio

Shell 29 14 Updated Feb 16, 2024

aertslab / popscle_helper_tools

Helper tools for popscle

Shell 20 6 Updated Apr 21, 2023

mbourgey / EBI_cancer_workshop_visualization

EBI cancer workshop course materials

Shell 20 9 Updated May 9, 2022

cellgeni / reprocess_public_10x

Scripts to help get fastqs

Shell 13 3 Updated Dec 19, 2024

vavouri-lab / RNA-kinship

Scripts used for assessment of kinship detection using RNA-seq data.

Shell 3 1 Updated Jul 19, 2019

jinghuazhao / COVID-19

COVID-19 related projects

Shell 2 Updated Sep 19, 2023

piquelab / demux_cellranger_brain

Demultiplexing pipeline with demuxlet for the brain project (hg38)

Shell 1 3 Updated Apr 17, 2022