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Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.

Python 24 5 Updated Jul 30, 2022

This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file.

Python 122 55 Updated Feb 13, 2020

Combinatorial antibiotic generation

Python 107 22 Updated Jun 23, 2024

An implementation of Delaney's ESOL method using the RDKit

Python 56 21 Updated Sep 6, 2018

An R package is designed to perform all noncompartmental analysis (NCA) calculations for pharmacokinetic (PK) data.

R 73 24 Updated Mar 3, 2025

Comprehensive cardiotoxicity prediction tool of small molecules on three targets: hERG, Nav1.5, Cav1.2

Jupyter Notebook 19 3 Updated Sep 25, 2024

Measuring agreement of lists

HTML 7 1 Updated Aug 27, 2023

Docking_py is a python library allowing a simplified use of the Smina, vina, qvina2 and qvinaw docking software. Docking_py can be easily automatize and scripted.

Python 60 8 Updated Jan 13, 2025

📊 A universal enrichment tool for interpreting omics data

R 1,063 258 Updated Feb 27, 2025
Java 44 28 Updated Feb 24, 2025
Jupyter Notebook 5 1 Updated Dec 23, 2024

A Cytoscape Jupyter widget

Python 270 63 Updated Jan 6, 2025

Modeling signaling networks in cancer

Python 2 3 Updated Jul 20, 2020

Finding paths of interest in networks

Go 3 2 Updated May 14, 2022

StarPep toolbox: a software for studying the antimicrobial chemical space with newtork science tools and similarity searching models

Java 4 1 Updated Apr 17, 2023

This is a Python script developed to facilitate planning and designing of biological experiments in Multi-well Plate setup, followed by automatically generating an input file for the Beckman Coulte…

Python 9 3 Updated Jul 7, 2021

Cyclic Flow Decomposition Module

Python 3 1 Updated May 28, 2021

Estimation of Variable Occupancy Target regions based on replicated experiments

R 3 1 Updated Apr 12, 2021

Automatically extract chemical information from scientific documents

Python 1 Updated Sep 8, 2017

R package

R 22 13 Updated Dec 16, 2023

SynBa: Improved estimation of drug combination synergies with uncertainty quantification

Jupyter Notebook 7 2 Updated Jun 30, 2023

Target discovery platform for exploring rankings of genes, disease models, and other entities. @JKU-ICG @datavisyn

TypeScript 12 2 Updated Feb 29, 2024

PETAL (ParallEl paThways AnaLyzer): a Python tool for deep biological pathway analysis

Python 35 6 Updated Dec 28, 2022

package for working with protein sequences and mutations, and FPbase API wrapper to retrieve fluorescent protein sequences

Python 5 1 Updated Jan 12, 2019

a simple, fast and complete app for analyzing the effect of individual drugs and their combinations

R 3 1 Updated Feb 3, 2023
Python 64 31 Updated Aug 19, 2023

Machine learning framework for predicting the responses of drug combinations in pre-clinical studies, such as those based on cell lines or patient-derived cells.

Python 26 14 Updated Oct 25, 2020
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