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Showing results

Scalable inference of gene regulatory networks using Apache Spark and XGBoost

Scala 18 3 Updated Feb 8, 2018

scRNA-seq analysis of EENT-ONB

R 13 4 Updated Jan 14, 2024

Gephi - The Open Graph Viz Platform

Java 5,964 1,571 Updated Sep 8, 2024

Multi-omic single-cell optimal transport tools

Python 118 9 Updated Dec 12, 2024

A ggplot extension for drawing smooth non-convex circles around a set of points.

R 17 3 Updated May 20, 2024

get things from one computer to another, safely

Python 20,580 652 Updated Dec 10, 2024
R 22 5 Updated Jun 4, 2024

Join subcellular Visium HD bins into cells

Jupyter Notebook 65 2 Updated Dec 11, 2024

PhyloVelo, Phylogeny-based transcriptomic velocity of single cells

Python 41 4 Updated Nov 7, 2023

Open source tools for computational pathology - Nature BME

Python 1,151 371 Updated Dec 6, 2024

HerbiV是一个具有多种功能的中药网络药理学分析工具,可进行经典的网络药理学及反向网络药理学分析。HerbiV is a multi-functional traditional chinese medicine network pharmacology analysis tool for classical network pharmacology and reverse network…

Jupyter Notebook 1 Updated Apr 11, 2023

HerbiV是一个具有多种功能的中药网络药理学分析工具,可进行经典的网络药理学及反向网络药理学分析。HerbiV is a multi-functional traditional chinese medicine network pharmacology analysis tool for classical network pharmacology and reverse network…

Python 24 12 Updated Nov 30, 2024

NumPy aware dynamic Python compiler using LLVM

Python 10,048 1,134 Updated Dec 13, 2024

A package to help convert different single-cell data formats to each other

R 393 57 Updated Feb 28, 2024

Mapping out the coarse-grained connectivity structures of complex manifolds.

Jupyter Notebook 211 33 Updated May 23, 2020

📊 A universal enrichment tool for interpreting omics data

R 1,039 254 Updated Nov 29, 2024

Python implementation of the Slingshot pseudotime algorithm

Jupyter Notebook 53 7 Updated Apr 28, 2024

Functions for identifying and characterizing continuous developmental trajectories in single-cell data.

R 275 43 Updated Apr 23, 2024

classic books of computer science!

1,538 704 Updated May 29, 2024

南方科技大学研究生学位论文LaTeX模板

TeX 217 51 Updated Oct 15, 2024

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

3,243 992 Updated Dec 4, 2024

Comparison of methods for trajectory inference on single-cell data 🥇

R 201 42 Updated Aug 30, 2023

ggplot extension: options for tailored facets, multiple colourscales and miscellaneous

R 591 37 Updated Dec 14, 2024

Quasilinear data representations for single-cell omics data analysis

Jupyter Notebook 42 3 Updated May 4, 2023

Batch balanced KNN

Python 151 25 Updated Oct 11, 2023

Annotated data.

Python 586 155 Updated Dec 12, 2024

Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"

Jupyter Notebook 56 20 Updated Dec 15, 2018

Deep probabilistic analysis of single-cell and spatial omics data

Python 1,266 359 Updated Dec 13, 2024

Detect doublets in single-cell RNA-seq data

Jupyter Notebook 138 73 Updated Dec 29, 2020

Panoramic stitching of single cell data

Python 268 49 Updated Apr 12, 2024
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