update

1Data/README.md

@@ -1,2 +1,11 @@
-# Liu2020ProteinCell
-Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome
+# Example data
+
+## Example amplicon 16S data
+
+- Metadata: amplicon_metadata.txt
+
+## Example metagenomic data
+
+- Metadata: metagenome_metadata.txt
+
+All the data could be downloaded in https://bigd.big.ac.cn/gsa/ by CRR in metadata.

1Data/amplicon_metadata.txt

@@ -0,0 +1,19 @@
+SampleID	Group	Date	Site	CRA	CRR	BarcodeSequence	LinkerPrimerSequence	ReversePrimer	Batch	Species	Sequencing	Platform	Description
+KO1	KO	2017/6/30	Chaoyang	CRA002352 	CRR117575	ACGCTCGACA	AACMGGATTAGATACCCKG	ACGTCATCCCCACCTTCC	1	Arabidopsis thaliana	Novagene	HiSeq2500	Knock-out replicate 1
+KO2	KO	2017/6/30	Chaoyang	CRA002352 	CRR117576	ATCAGACACG	AACMGGATTAGATACCCKG	ACGTCATCCCCACCTTCC	1	Arabidopsis thaliana	Novagene	HiSeq2500	Knock-out replicate 2
+KO3	KO	2017/7/2	Changping	CRA002352	CRR117577	ATATCGCGAG	AACMGGATTAGATACCCKG	ACGTCATCCCCACCTTCC	1	Arabidopsis thaliana	Novagene	HiSeq2500	Knock-out replicate 3
+KO4	KO	2017/7/2	Changping	CRA002352	CRR117578	CACGAGACAG	AACMGGATTAGATACCCKG	ACGTCATCCCCACCTTCC	1	Arabidopsis thaliana	Novagene	HiSeq2500	Knock-out replicate 4
+KO5	KO	2017/7/4	Haidian	CRA002352	CRR117579	CTCGCGTGTC	AACMGGATTAGATACCCKG	ACGTCATCCCCACCTTCC	1	Arabidopsis thaliana	Novagene	HiSeq2500	Knock-out replicate 5
+KO6	KO	2017/7/4	Haidian	CRA002352	CRR117580	TAGTATCAGC	AACMGGATTAGATACCCKG	ACGTCATCCCCACCTTCC	1	Arabidopsis thaliana	Novagene	HiSeq2500	Knock-out replicate 6
+OE1	OE	2017/6/30	Chaoyang	CRA002352	CRR117581	TCTCTATGCG	AACMGGATTAGATACCCKG	ACGTCATCCCCACCTTCC	1	Arabidopsis thaliana	Novagene	HiSeq2500	Over-expresion replicate 1
+OE2	OE	2017/6/30	Chaoyang	CRA002352	CRR117582	TACTGAGCTA	AACMGGATTAGATACCCKG	ACGTCATCCCCACCTTCC	1	Arabidopsis thaliana	Novagene	HiSeq2500	Over-expresion replicate 2
+OE3	OE	2017/7/2	Changping	CRA002352	CRR117583	CATAGTAGTG	AACMGGATTAGATACCCKG	ACGTCATCCCCACCTTCC	1	Arabidopsis thaliana	Novagene	HiSeq2500	Over-expresion replicate 3
+OE4	OE	2017/7/2	Changping	CRA002352	CRR117584	CGAGAGATAC	AACMGGATTAGATACCCKG	ACGTCATCCCCACCTTCC	1	Arabidopsis thaliana	Novagene	HiSeq2500	Over-expresion replicate 4
+OE5	OE	2017/7/4	Haidian	CRA002352	CRR117585	ATACGACGTA	AACMGGATTAGATACCCKG	ACGTCATCCCCACCTTCC	1	Arabidopsis thaliana	Novagene	HiSeq2500	Over-expresion replicate 5
+OE6	OE	2017/7/4	Haidian	CRA002352	CRR117586	TCACGTACTA	AACMGGATTAGATACCCKG	ACGTCATCCCCACCTTCC	1	Arabidopsis thaliana	Novagene	HiSeq2500	Over-expresion replicate 6
+WT1	WT	2017/6/30	Chaoyang	CRA002352	CRR117587	CGTCTAGTAC	AACMGGATTAGATACCCKG	ACGTCATCCCCACCTTCC	1	Arabidopsis thaliana	Novagene	HiSeq2500	Wild-type replicate 1
+WT2	WT	2017/6/30	Chaoyang	CRA002352	CRR117588	TCTACGTAGC	AACMGGATTAGATACCCKG	ACGTCATCCCCACCTTCC	1	Arabidopsis thaliana	Novagene	HiSeq2500	Wild-type replicate 2
+WT3	WT	2017/7/2	Changping	CRA002352	CRR117589	CACGCGAGTC	AACMGGATTAGATACCCKG	ACGTCATCCCCACCTTCC	1	Arabidopsis thaliana	Novagene	HiSeq2500	Wild-type replicate 3
+WT4	WT	2017/7/2	Changping	CRA002352	CRR117590	ACGACTACAG	AACMGGATTAGATACCCKG	ACGTCATCCCCACCTTCC	1	Arabidopsis thaliana	Novagene	HiSeq2500	Wild-type replicate 4
+WT5	WT	2017/7/4	Haidian	CRA002352	CRR117591	CGTAGACTAG	AACMGGATTAGATACCCKG	ACGTCATCCCCACCTTCC	1	Arabidopsis thaliana	Novagene	HiSeq2500	Wild-type replicate 5
+WT6	WT	2017/7/4	Haidian	CRA002352	CRR117592	TACGAGTATG	AACMGGATTAGATACCCKG	ACGTCATCCCCACCTTCC	1	Arabidopsis thaliana	Novagene	HiSeq2500	Wild-type replicate 6

1Data/metagenome_metadata.txt

@@ -0,0 +1,13 @@
+SampleID	Group	Replicate	Sex	Individual	GSA	CRR	project_accession
+C1	Cancer	1	Male  	p136	CRA002355	CRR117732	PRJCA002236
+C2	Cancer	2	Male  	p143	CRA002355	CRR117733	PRJCA002236
+C3	Cancer	3	Male  	p144	CRA002355	CRR117734	PRJCA002236
+C4	Cancer	4	Male  	p146	CRA002355	CRR117735	PRJCA002236
+C5	Cancer	5	Female	p153	CRA002355	CRR117736	PRJCA002236
+C6	Cancer	6	Female	p156	CRA002355	CRR117737	PRJCA002236
+N1	Normal	1	Male  	p136	CRA002355	CRR117738	PRJCA002236
+N2	Normal	2	Male  	p143	CRA002355	CRR117739	PRJCA002236
+N3	Normal	3	Male  	p144	CRA002355	CRR117740	PRJCA002236
+N4	Normal	4	Male  	p146	CRA002355	CRR117741	PRJCA002236
+N5	Normal	5	Female	p153	CRA002355	CRR117742	PRJCA002236
+N6	Normal	6	Female	p156	CRA002355	CRR117743	PRJCA002236