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Commits on Sep 22, 2020

• nit

  zmunro

  committed
  42f0feb

• adjusted line breaks

  zmunro

  committed
  fba3bb9

• changed order list to unordered

  zmunro

  committed
  9820c9a

• changed order list to unordered

  zmunro

  committed
  e2629fb

• removed url escape code

  zmunro

  committed
  e385a6b

• added collabsible explanations in readme

  zmunro

  committed
  24dbb6b

• added documentation

  zmunro

  committed
  3c80c81

• added new kraken2 translate file

  zmunro

  committed
  8f7b412

Commits on Aug 20, 2020

• Fixing printed messages about number of reads printed to file

  

  Jennifer Lu

  committed
  be4cff0

• Allowing script to check for 'READID', 'READID/1', 'READID/2'.

  

  Jennifer Lu

  committed
  697df3f

Commits on Jul 14, 2020

• Adding combine_mpa.py. Allowing mpa output with percentages for kreport2mpa.py.

  Show description for d8cc342
  

  Jennifer Lu

  committed
  d8cc342

Commits on Jul 13, 2020

• Adding kreport2mpa.py (from github.com/jennifer.lu/Bracken) and updating Copyright

  

  Jennifer Lu

  committed
  e4eb51f

Commits on May 18, 2020

• Fixing reading kraken1 reports (where root requires R level assignment)

  

  Jennifer Lu

  committed
  53957a4

Commits on May 10, 2020

• Formatting README.md

  

  Jennifer Lu

  committed
  0862e28

Commits on Apr 21, 2020

• Merge pull request jenniferlu717#13 from pvanheus/hashbang_fix

  Show description for 6950d17
  jenniferlu717

  authored
  6950d17

Commits on Apr 20, 2020

• Fix hashbang lines for scripts

  pvanheus

  committed
  aa2e453

• Adding --use-read-len option to Kraken report

  

  Jennifer Lu

  committed
  75a7753

Commits on Apr 19, 2020

• Fixing formatting for percentage column

  

  Jennifer Lu

  committed
  6258632

• Linking Kraken programs to README

  

  Jennifer Lu

  committed
  57322a2

• ...

  

  Jennifer Lu

  committed
  74d6ea8

• Fixing README format

  

  Jennifer Lu

  committed
  811d7dd

• Fixing README formatting

  

  Jennifer Lu

  committed
  28b19bd

• Adding make_kreport.py/make_ktaxonomy.py and updating README.md

  

  Jennifer Lu

  committed
  705bee1

Commits on Apr 15, 2020

• chmod

  

  Jennifer Lu

  committed
  f1db326

• Fixing README.md

  

  Jennifer Lu

  committed
  6476a56

• Fixing spacing in README.md

  

  Jennifer Lu

  committed
  7ea128a

• Updating README links

  

  Jennifer Lu

  committed
  3a0ea3e

• Adding fix_unmapped.py to README.md

  

  Jennifer Lu

  committed
  9f49ad4

• Add fix_unmapped.py script to find unmapped seqid2taxid values

  

  Jennifer Lu

  committed
  ea781ca

Commits on Apr 10, 2020

• Update documentation for extract_kraken_reads.py

  

  Jennifer Lu

  committed
  19ce916

Commits on Apr 8, 2020

• Reduced RAM usage (reads printed as found, paired reads required two output files)

  

  Jennifer Lu

  committed
  763fb85

Commits on Mar 29, 2020

• Removing delimiter option. Adding option for fastq output

  

  Jennifer Lu

  committed
  7c2a831

Commits on Mar 4, 2020

• Changing gzip open from r to rt

  

  Jennifer Lu

  committed
  301ff89

Commits on Feb 19, 2020

• Fixing UnboundLocalError for exclude_taxids

  

  Jennifer Lu

  committed
  ad17b84

• Fixing --exclude options for extracting reads

  

  Jennifer Lu

  committed
  1f78638

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