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  • PanTax Public

    Forked from LuoGroup2023/PanTax

    Strain-level taxonomic classification of metagenomic data using pangenome graphs

    Python GNU General Public License v3.0 Updated Dec 15, 2024

  • vg-test Public

    Shell Updated Oct 29, 2024

  • bioconda-recipes Public

    Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    Shell MIT License Updated Oct 9, 2024

  • DAP-seq-pipline Public

    Shell Updated Sep 18, 2024

  • rust_learning Public

    Updated Sep 2, 2024

  • environment Public

    Updated Jul 1, 2024

  • Mock-community-data Public

    Mock community data collection

    Updated Jun 22, 2024

  • klib Public

    Forked from attractivechaos/klib

    A standalone and lightweight C library

    C MIT License Updated Dec 26, 2023

  • Strainline Public

    Forked from HaploKit/Strainline

    Full-length de novo viral haplotype reconstruction from noisy long reads

    Python GNU General Public License v3.0 Updated Dec 26, 2023

  • HyLight Public

    Forked from kangxiongbin/HyLight

    HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NGS and 3rd generation sequencing to rapidly and accurately as…

    C++ MIT License Updated Dec 14, 2023

  • rpvg Public

    Forked from jonassibbesen/rpvg

    Method for inferring path posterior probabilities and abundances from pangenome graph read alignments

    C++ MIT License Updated Jun 5, 2023