Official code repository for the paper: xxx
TODO
For conda environments, please refer to https://github.com/zshi0616/DeepGate2
Install python-deepgate
git clone https://github.com/Ironprop-Stone/python-deepgate.git
cd python-deepgate
bash install.sh
Prepare required tools
bash build.sh
To run the training stage of DeepGate3 with single GPU, you can run the following script:
python -u ./src/train_dg3.py \
--exp_id you_exp_id \
--data_dir path/to/inmemory \
--npz_dir pat/to/npz \
--pretrained_model_path \path\to\dg2_ckpt \
--tf_arch plain --lr 1e-4 \
--workload --gpus 0 --batch_size 128 --epoch 200
If there is no data in data_dir, the code will parse data from npz_dir and generate inmemory data in data_dir.