Arkadiy-Garber
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BagOfTricks Public
A collection of python and bash scripts for various bioinformatics-related tasks
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MagicLamp Public
A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.
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Coriolan Public
A lightweight software to generate phylogenomic trees from unannotated genomes
Python Other UpdatedMar 9, 2024 -
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MHCscan Public
Software tool for identification of multiheme cytochromes
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PLOS-Biology-Review-code Public
Custom scripts used for PLOS Biology Review
Python UpdatedDec 2, 2023 -
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bioinf_tools Public
Forked from AstrobioMike/bitBioinformatics Tools
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MAB Public
Forked from jekyll/minimaMinima is a one-size-fits-all Jekyll theme for writers.
SCSS MIT License UpdatedJul 4, 2023 -
SprayNPray Public
Rapid and simple taxonomic profiling of genome and metagenome contigs
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ParaHunter Public
Identification of gene paralogs in genomes, and calculation of dS and dN/dS values for paralogous gene pairs
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LithoGenie Public
HMM-based identification and categorization of genes and operons relevant to chemolithoautotrophic metabolisms
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binarena Public
Forked from qiyunlab/binarenaJavaScript BSD 3-Clause "New" or "Revised" License UpdatedMar 28, 2022 -
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FeGenie Public
HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes
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KOALA-formatter Public
Script for converting raw KO-number output from GhostKOALA and BlastKOALA into hierarchically-structured CSV format
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Python scripts used in the analysis of P. longispinus endosymbionts.
Python UpdatedJun 9, 2021 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell UpdatedApr 22, 2021 -
Taxonsluice Public
Reference-based, heuristic algorithm for identification of potential contaminants in mothur-formatted OTU tables
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bvcn-binder-lesson1 Public
Forked from bassiousmaximus/bvcn-binder-lesson1Shell UpdatedMar 3, 2021 -
AstrobioMike.github.io Public
Forked from AstrobioMike/AstrobioMike.github.ioSite to help biologists wade their way into bioinformatics.
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bvcn-binder-paml Public
Lesson and tutorial on generating codon alignments and estimating dN/dS using codeml (PAML)
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PseudoHunter Public
Identification of pseudogenes based on pairwise comparison between genomes
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bvcn-binder-trinity Public
Tutorial on transcriptome assembly using Trinity
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bvcn-binder-htseq Public
Lesson and tutorial on generating count tables from read-mapping data