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Regression Tests, Bugfixes, new CLI#3

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aromberg merged 39 commits intomainBIONF/XspecT2:mainfrom devBIONF/XspecT2:devCopy head branch name to clipboardJan 26, 2024

+6,062-118,312

Commits

Commits on Dec 25, 2023

• 🙈 update gitignore and remove ignored files

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• 🎨 format code using Black

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• 👷 add Black workflow

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• 🧪 test black workflow

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• ✅ test Black workflow with correct formatting

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• Merge pull request #1 from BIONF/feature/format-workflow

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Commits on Dec 26, 2023

• 🙈 update gitignore

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Commits on Dec 27, 2023

• 🙈 update gitignore

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• ✅ add regression tests

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Commits on Jan 18, 2024

• 🙈 update gitignore

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• ✅ add regression tests

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• 🔀 manually merge 6af3f96

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Commits on Jan 19, 2024

• 🐛 fix species classification return and web strain typing (KAN-75, KAN-71)

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• ✅ update tests to account for fixed species classification output

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• ✅ add web app strain typing tests

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• KAN-46 add basic filter downloads ✨

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• KAN-44 add pytest workflow 👷

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• KAN-44 update pytest workflow 👷

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• KAN-46 update downloader to include SVM data 🚑️

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• Merge pull request #2 from BIONF/feature/regression-tests

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• update setup python version 👷

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Commits on Jan 20, 2024

• KAN-47 remove ClassT from web app🧹

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• KAN-43 remove dead code from Flask app ⚰️

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• KAN-43 force git to rename to lowercase letter🪲

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• KAN-43 remove dead code ⚰️

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• KAN-37 add dependency for CLI ➕

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Commits on Jan 22, 2024

• KAN-37 add unified CLI✨

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• KAN-37 update readme📝

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Commits on Jan 24, 2024

• KAN-93 outsource filters🗃️

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• KAN-38 restructure project as python package

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Commits on Jan 25, 2024

• KAN-38 fix unavailable config file

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• KAN-38 remove files/

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• update gitignore to exclude code2flow outputs

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• KAN-38 update CLI to pull project details from pyproject

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• KAN-85 move filter hosting to applbio

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Commits on Jan 26, 2024

• update gitignore to include files generated during runtime

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• KAN-51 add codecov to test workflow

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• manually merge 309c53b and b790a45

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• resolve merge conflict

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