KAN-93 outsource filters🗃️

BIONF · aromberg · Jan 26, 2024 · Dec 25, 2023 · Dec 25, 2023 · Dec 25, 2023
commit 940aec0972cbc9f327521a2232c3eeb17fe1a3e9
diff --git a/Training_data/Training_data_CoreGenome.csv b/Training_data/Training_data_CoreGenome.csv
diff --git a/Training_data/Training_data_IC.csv b/Training_data/Training_data_IC.csv
diff --git a/download_filters.py b/download_filters.py
@@ -8,30 +8,36 @@
 def download_test_filters(url):
     """Download filters."""
 
+    if not os.path.exists("filter"):
+        os.makedirs("filter")
+
+    if not os.path.exists("Training_data"):
+        os.makedirs("Training_data")
+
     r = requests.get(url, allow_redirects=True, timeout=10)
-    with open("filter/test_filters.zip", "wb") as f:
+    with open("filter/filters.zip", "wb") as f:
         f.write(r.content)
 
     shutil.unpack_archive(
-        "filter/test_filters.zip",
+        "filter/filters.zip",
         "filter/temp",
         "zip",
     )
 
     shutil.copytree(
-        "filter/temp/test_filters/Training_data",
+        "filter/temp/filters/Training_data",
         "Training_data",
         dirs_exist_ok=True,
     )
 
-    shutil.rmtree("filter/temp/test_filters/Training_data")
+    shutil.rmtree("filter/temp/filters/Training_data")
 
     shutil.copytree(
-        "filter/temp/test_filters",
+        "filter/temp/filters",
         "filter",
         dirs_exist_ok=True,
     )
 
     shutil.rmtree("filter/temp")
 
-    os.remove("filter/test_filters.zip")
+    os.remove("filter/filters.zip")
diff --git a/filter/FilterClonetypes.txt b/filter/FilterClonetypes.txt
diff --git a/filter/IC1.txt b/filter/IC1.txt
diff --git a/filter/IC2.txt b/filter/IC2.txt
diff --git a/filter/IC3.txt b/filter/IC3.txt
diff --git a/filter/IC4.txt b/filter/IC4.txt
diff --git a/filter/IC5.txt b/filter/IC5.txt
diff --git a/filter/IC6.txt b/filter/IC6.txt
diff --git a/filter/IC7.txt b/filter/IC7.txt
diff --git a/filter/IC8.txt b/filter/IC8.txt
diff --git a/filter/OXAs/families/OXA-134_family.txt b/filter/OXAs/families/OXA-134_family.txt
diff --git a/filter/OXAs/families/OXA-143_family.txt b/filter/OXAs/families/OXA-143_family.txt
diff --git a/filter/OXAs/families/OXA-211_family.txt b/filter/OXAs/families/OXA-211_family.txt
diff --git a/filter/OXAs/families/OXA-213_family.txt b/filter/OXAs/families/OXA-213_family.txt
diff --git a/filter/OXAs/families/OXA-214_family.txt b/filter/OXAs/families/OXA-214_family.txt
diff --git a/filter/OXAs/families/OXA-229_family.txt b/filter/OXAs/families/OXA-229_family.txt
diff --git a/filter/OXAs/families/OXA-23_family.txt b/filter/OXAs/families/OXA-23_family.txt
diff --git a/filter/OXAs/families/OXA-24_family.txt b/filter/OXAs/families/OXA-24_family.txt
diff --git a/filter/OXAs/families/OXA-266_family.txt b/filter/OXAs/families/OXA-266_family.txt
diff --git a/filter/OXAs/families/OXA-270_family.txt b/filter/OXAs/families/OXA-270_family.txt
diff --git a/filter/OXAs/families/OXA-279_family.txt b/filter/OXAs/families/OXA-279_family.txt