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update announcements.rst
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pchaumeil committed May 11, 2022
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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -21,7 +21,7 @@ Please post questions and issues related to GTDB-Tk on the Issues section of the
GTDB-Tk v2.1.0 includes the following new features:
- GTDB-TK now uses a **divide-and-conquer** approach where the bacterial reference tree is split into multiple **class**-level subtrees. This reduces the memory requirements of GTDB-Tk from **320 GB** of RAM when using the full GTDB R07-RS207 reference tree to approximately **50 GB**. A manuscript describing this approach is in preparation. If you wish to continue using the full GTDB reference tree use the `--full-tree` flag.
This is the main change from v2.0.0. The split tree approach has been modified from order-level trees to class-level trees to resolve specific classification issues (See [#383](https://github.com/Ecogenomics/GTDBTk/issues/383)).
- Genomes that can not be assigned to a domain (e.g. genomes with no bacterial or archaeal markers or genomes with no genes called by Prodigal) are now reported in the `gtdbtk.bac120.summary.tsv` as 'Unclassified'
- Genomes that cannot be assigned to a domain (e.g. genomes with no bacterial or archaeal markers or genomes with no genes called by Prodigal) are now reported in the `gtdbtk.bac120.summary.tsv` as 'Unclassified'
- Genomes filtered out during the alignment step are now reported in the `gtdbtk.bac120.summary.tsv` as 'Unclassified Bacteria/Archaea'
- `__write_single_copy_genes` flag in now available in the `classify_wf` and `de_novo_wf` workflows.

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2 changes: 1 addition & 1 deletion docs/src/changelog.rst
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Expand Up @@ -9,7 +9,7 @@ Change log
Major changes:

* GTDB-TK now uses a **divide-and-conquer** approach where the bacterial reference tree is split into multiple **class**-level subtrees. This reduces the memory requirements of GTDB-Tk from **320 GB** of RAM when using the full GTDB R07-RS207 reference tree to approximately **50 GB**. A manuscript describing this approach is in preparation. If you wish to continue using the full GTDB reference tree use the `--full-tree` flag. This is the main change from v2.0.0. The split tree approach has been modified from order-level trees to class-level trees to resolve specific classification issues (See [#383](https://github.com/Ecogenomics/GTDBTk/issues/383)).
* Genomes that can not be assigned to a domain (e.g. genomes with no bacterial or archaeal markers or genomes with no genes called by Prodigal) are now reported in the `gtdbtk.bac120.summary.tsv` as 'Unclassified'
* Genomes that cannot be assigned to a domain (e.g. genomes with no bacterial or archaeal markers or genomes with no genes called by Prodigal) are now reported in the `gtdbtk.bac120.summary.tsv` as 'Unclassified'
* Genomes filtered out during the alignment step are now reported in the `gtdbtk.bac120.summary.tsv` as 'Unclassified Bacteria/Archaea'
* `__write_single_copy_genes` flag in now available in the `classify_wf` and `de_novo_wf` workflows.

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