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aaronmussig

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Commits on Apr 24, 2024

• build(docker): Remove line continuation.

  Show description for 6753520
  aaronmussig

  committed
  6753520

Commits on Mar 27, 2024

• build(docker): Update docker for Skani

  aaronmussig

  committed
  99658d2

Commits on May 8, 2023

• docs(R214): Updated for 2.3.0.

  aaronmussig

  committed
  2aec9ac

Commits on Apr 3, 2023

• docs(version): Updated changelog and version for next release.

  aaronmussig

  committed
  65437a1

• Merge branch 'master' into staging

  aaronmussig

  committed
  6a79616

• refactor(config): Refactored config to read variables dependent on GTDBTK_DATA_PATH dynamically.

  Show description for 0819d95
  aaronmussig

  committed
  0819d95

Commits on Mar 15, 2023

• Update PfamScan.py

  Show description for 3bcb46a
  aaronmussig

  authored
  3bcb46a

Commits on Feb 14, 2023

• docs(changelog): Add issue number to release 2.2.2.

  aaronmussig

  committed
  7012655

• docs(FastANI): Add FAQ explaining FastANI using more CPUs than allocated.

  aaronmussig

  committed
  362e148

• fix(Dockerfile): Fix FastANI version.

  aaronmussig

  committed
  0865a21

• build(setup.py): Add missing pydantic dependency.

  aaronmussig

  committed
  45bbba9

• ci(github): Bump python versions.

  aaronmussig

  committed
  eef2a2a

• ci(github): Bump python versions.

  aaronmussig

  committed
  29c44bd

• ci(github): Bump python versions.

  aaronmussig

  committed
  694c054

Commits on Dec 1, 2022

• docs(installation): Update Bioconda install documentation and README.md.

  aaronmussig

  committed
  08ef9cd

Commits on Sep 30, 2022

• docs(2.x.x): Update documentation for next release.

  aaronmussig

  committed
  64183b7

• fix(--gtdbtk_classification_file): Add method to parse taxonomy from classify file.

  Show description for 0f124fa
  aaronmussig

  committed
  0f124fa

• refactor(gtdbtk.files.classify_summary): Added type hints.

  aaronmussig

  committed
  7d45a9b

• fix(tigrfam_search): Fixed typo in stderr for subprocess.Popen.

  aaronmussig

  committed
  7054c69

Commits on Sep 29, 2022

• Merge pull request #436 from lfenske-93/master

  Show description for 4503e4b
  aaronmussig

  authored
  4503e4b

• Merge pull request #437 from Ecogenomics/#433

  Show description for 4a932df
  aaronmussig

  authored
  4a932df

• fix(root/de_novo_wf): Add additional checks to outgroup_taxon to restrict ranges of input.

  Show description for 46804fb
  aaronmussig

  committed
  46804fb

Commits on Sep 12, 2022

• refactor(gtdbtk.io): Refactored package to be files instead of io.

  aaronmussig

  committed
  b249cb4

Commits on Sep 11, 2022

• docs(logo): Added GTDB-Tk illustrator document for logo.

  aaronmussig

  committed
  fdbb0d3

Commits on Jul 1, 2022

• Updated requirements

  aaronmussig

  committed
  4d9dcf4

Commits on Jun 28, 2022

• docs(files/summary): Updated AF to Alignment Fraction to be more clear.

  aaronmussig

  committed
  12f4de7

Commits on Apr 11, 2022

• Update CI/CD script for building documentation.

  aaronmussig

  committed
  e85def3

Commits on Apr 8, 2022

• Updated documentation for 2.0.0

  aaronmussig

  committed
  7863333

• Merge pull request #377 from Ecogenomics/staging

  Show description for cbf3e09
  aaronmussig

  authored
  cbf3e09

Commits on Apr 7, 2022

• Set version to 2.0.0

  aaronmussig

  committed
  5d6ef59

• Merge pull request #376 from Ecogenomics/moving_to_ar53

  Show description for ddd074a
  aaronmussig

  authored
  ddd074a

• Set multiprocessing to fork process in align instead of fork.

  aaronmussig

  committed
  40eb08b

Commits on Mar 31, 2022

• Allow FastTree to support gzipped alignments.

  aaronmussig

  committed
  ef98366

Commits on Mar 4, 2022

• Merge pull request #357 from mruehlemann/patch-1

  Show description for aec940a
  aaronmussig

  authored
  aec940a

Commits on Oct 15, 2021

• Lock minor version for documentation requirements.txt

  aaronmussig

  committed
  1e10c56

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