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RainyEricYe

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Commits on Jul 7, 2022

• Update README.md

  RainyEricYe

  authored
  0ae64dd

Commits on Jan 10, 2021

• update bamDCS to check cigar and seq length differences for sscs

  RainyEricYe

  committed
  91bb985

Commits on Oct 27, 2020

• update bamDCS to check cigar and seq length differences

  RainyEricYe

  committed
  a478acb

Commits on Oct 12, 2020

• use ready-to-use bamDCS and bamRdf

  RainyEricYe

  committed
  23d299e

Commits on May 9, 2020

• add script for DSdata and simulation

  RainyEricYe

  committed
  b986b68

Commits on Mar 10, 2020

• add more scripts to folder DSdata_scripts

  RainyEricYe

  committed
  475b5fc

Commits on Mar 5, 2020

• add DSdata scripts for statistical analysis of depth and mut spectrum

  RainyEricYe

  committed
  761a23f

• add lfmd.pkgs.txt for reconstructing conda env lfmd

  RainyEricYe

  committed
  b694af0

Commits on Mar 4, 2020

• add thread option in align.sh

  RainyEricYe

  committed
  44b1edc

Commits on Mar 3, 2020

• add DSdata_scripts and simulate

  RainyEricYe

  committed
  0cb38f1

• give aln_opt automatically in align.sh

  RainyEricYe

  committed
  a7a8177

Commits on Feb 24, 2020

• update simulation tools to random sheering with high error rate at the read ends

  RainyEricYe

  committed
  edb0a6a

Commits on Feb 17, 2020

• add adjust*.pl fakeMut*.pl getFrag*.pl sim*.py simu.randomSheer_frag.sh

  RainyEricYe

  committed
  7bd56dc

Commits on Dec 5, 2019

• add example/run_aln.sh example/run_test.sh; change mut_opt in lfmd.sh

  RainyEricYe

  committed
  90e955d

• add fa2fq.pl filtFQ.pl getFrag.pl updateReadID.pl

  RainyEricYe

  committed
  08b47be

Commits on Nov 27, 2019

• add align.sh

  RainyEricYe

  committed
  8dc7d5a

• update bamDCS to 2.4; update tag_to_header; update lfmd.sh; update tag_to_head.py

  RainyEricYe

  committed
  7cd4d2c

• update bamDCS to 2.4; update tag_to_header; update lfmd.sh; delete bwa samtools

  RainyEricYe

  committed
  745579f

Commits on Sep 18, 2019

• add alternative caller from duplex sequencing

  RainyEricYe

  committed
  58b8671

• rm example/.bam .seq1.aln .seq2.aln

  RainyEricYe

  committed
  95e3814

• rm ts.sh; typo in examplelfmd.sh

  RainyEricYe

  committed
  ab942a7

• Update README.md

  RainyEricYe

  authored
  726546d

• Update README.md

  RainyEricYe

  authored
  364c359

• add adjust_p2.pl bamRdf2fq.pl example/ lhmut

  RainyEricYe

  committed
  2758c60

Commits on Sep 12, 2019

• add README.md

  RainyEricYe

  authored
  a822b83

Commits on Aug 30, 2019

• add lhmut in lfmd2.sh

  RainyEricYe

  committed
  1a32f62

• v0.5; update lfmd.sh and tag_to_header.py

  RainyEricYe

  committed
  bbdf420

• v0.4; init

  RainyEricYe

  committed
  e22359d

• Initial commit

  RainyEricYe

  authored
  ce0acd5