Count bit frequencies in files

Slides from my Medical AI talk at Plymouth November 2023

NorthernBUG10 Introduction to Git Workshop

Simple tokenised template system for SGE

Alastair Droop's miscellaneous R functions

Filter HTSeq Counts matrix files

Display the final character of a file

Process and simplify featureCounts output files

Simple tools to extract multicomponent (FAM & ROX) data from Thermo Fisher EDS and amplification files.

R package for analysis of circulating miRNA from qPCR data

Align lines in a file by the first occurrence of a given substring

An efficient FASTQ manipulation suite

Alternative Endings to Alternative Endings to an Unwritten Ballad

A simple script to bulk update file ctime attributes.

Simple lines and arrows in R plot margins

Print the number of reads aligning to windows of a fixed size in a BAM file.

Python tutorials

A brief demonstration of some parts of the Bioconductor base Biostrings package.

Generate window mappability values from per-nucleotide WIG data

Resources for the Leeds Scientific Computing seminar series

Salmon quantification of raw FASTQ files

qsubsec templates for generating reference datasets from GENCODE

Machine Learning Resources collected from the HDRUK UK Fellows's day 2018 (2018-11-15)

A script to convert simple association files to graphML format.

Tabulate single characters in a file

Detection and Removal of initial UMI Tags from FASTQ Files

Basic DNA ranges for Python

SGE job & log summarisation scripts