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Issues list

Meaning of SU
#377 by jsha129 was closed Mar 2, 2022
2
Can I get the copy number information?
#375 by hayeon-pak was closed Mar 7, 2022
2
SV length
#374 by cfz1998 was closed Feb 10, 2022
GT are all ./.
#366 by meqili was closed Oct 19, 2021
2
To solve the problem of samtools errors like this ： “samtools view: writing to standard output failed: Broken pipe； samtools view: error closing standard output: -1 ”
#365 by ghost was closed Nov 26, 2021
Changing RG:Z flag in merged bam before lumpy
#353 by markutz556 was closed Jan 8, 2021
genome file in bedpe_sort.py
#351 by nitinra was closed Dec 18, 2020
choosing the right size for -b flad (breakpoint size) in cnvanator_to_bedpes.py
#349 by nitinra was closed Dec 17, 2020
6
Using a non-bundled htslib version
#331 by samfux84 was closed Mar 27, 2020
4
Lumpyexpress produces no output and no errors for one sample
#329 by calizilla was closed May 11, 2020
1
Lumpy specifies an inversion with two breakends only
#325 by jazberna1 was closed Jan 20, 2020
2
lumpyexpress segmentation fault on a subset of samples
#314 by sofieobr was closed Sep 11, 2019
13
command not found for lumpyexpress
#311 by SaraAlthubaiti was closed Aug 9, 2019
2
Install errors
#305 by hepcat72 was closed Jun 4, 2019
2
display 0.3.0 version
#303 by sfehrmann was closed Jun 29, 2022
1
head instead of tail ?
#302 by lindenb was closed Apr 19, 2019
2
Some error raised and some questions
#299 by codeunsolved was closed Apr 17, 2019
2
Is the last stable release from Lumpy from 2016?
#294 by evanbiederstedt was closed Feb 20, 2019
2
lumpy_filter: report total number of alignments
#282 by brentp was closed May 7, 2019
1
Latest version of Lumpy (2018)
#275 by ahwanpandey was closed Dec 17, 2018
1
Question about filtering germline or somatic SV?
#268 by lss1227 was closed Sep 14, 2018
2
Qusetion about count
#266 by panzhaodong123 was closed Sep 3, 2018
1
lumpyexpress segmentation fault on b37 aligned tumor-normal pairs
#259 by fpbarthel was closed Aug 1, 2018
3
Missing ID for evidence of PE reads.
#254 by zhliUU was closed Jul 26, 2018
3
Filter VCF Prior to Running SVTyper
#253 by andrewSharo was closed Jul 24, 2018
19
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