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Commits on Apr 26, 2023

• Replace string.maketrans with str.maketrans. Set output_key when bulge site missing

  martinaryee

  committed
  997b892

• Add (currently unused) PAM option to visualize

  martinaryee

  committed
  65b6631

Commits on Apr 25, 2023

• README updates

  martinaryee

  committed
  0d0b144

• Syntax fixes for Python3, tab->4space

  martinaryee

  committed
  10d9e7f

• Removed nwalign requirement

  martinaryee

  committed
  f4ddd24

• Updated umi submodule with python3 changes

  martinaryee

  committed
  62fc491

• Updated umi

  martinaryee

  committed
  b646228

• Merge branch 'alt_tag' into dev

  martinaryee

  committed
  76ab9a6

• Merge branch 'dev'

  martinaryee

  committed
  d7ec580

• Allow variable length primers

  martinaryee

  committed
  60d860b

• Added 'cores' option. Renamed HG19_path to genome_path.

  martinaryee

  committed
  c1f5baa

Commits on Apr 5, 2023

• Added support for primer1/primer2 specification in manifest

  martinaryee

  committed
  19b98ab

• Updates for Python 3

  martinaryee

  committed
  994e5ae

Commits on Apr 4, 2023

• Merge pull request #70 from tsailabSJ/master

  Show description for e24cfb2
  martinaryee

  authored
  e24cfb2

Commits on Feb 17, 2021

• Merge pull request #62 from aryeelab/martinaryee-patch-1

  Show description for dfb5be8
  martinaryee

  authored
  dfb5be8

• Update README.md

  martinaryee

  authored
  81b98a3

Commits on Jun 1, 2019

• Merge pull request #52 from aryeelab/bugfix/lowercase

  Show description for c608522
  martinaryee

  authored
  c608522

• Merge branch 'bugfix/lowercase' into dev

  martinaryee

  committed
  c08a4a8

Commits on Jul 21, 2017

• Update README.md

  martinaryee

  authored
  eeacc8c

Commits on May 24, 2017

• Bumped up the umi revision

  martinaryee

  committed
  75d2e0f

• Set window_size and max_mismatches to defaults if not specified

  martinaryee

  committed
  2b40bbf

Commits on May 23, 2017

• Updated test reference output files to include 'Realigned Target Sequence' column

  martinaryee

  committed
  60105be

Commits on Apr 12, 2016

• Travis badge in README now reflects master branch

  martinaryee

  committed
  6f3c5de

Commits on Mar 21, 2016

• Travis badge in README now reflects master branch

  martinaryee

  committed
  cf3bb47

Commits on Feb 26, 2016

• Added regex to requirements.txt

  martinaryee

  committed
  cb465cd

• Added nwalign to requirements.txt

  martinaryee

  committed
  0db6b82

Commits on Jan 19, 2016

• Merge pull request #30 from aryeelab/dev

  Show description for bd3bc3c
  martinaryee

  committed
  bd3bc3c

• Merge branch 'master' into dev

  martinaryee

  committed
  0706983

• Added FAQ: Can I analyze data without UMIs?

  martinaryee

  committed
  e7d35c8

• Expanded the umitag step functionality description

  martinaryee

  committed
  27206a6

Commits on Jan 18, 2016

• Update README.md

  Show description for eeb7123
  martinaryee

  committed
  eeb7123

• Update README.md

  Show description for f857647
  martinaryee

  committed
  f857647

• Update README.md

  Show description for 2a65cc4
  martinaryee

  committed
  2a65cc4

• Update README.md

  Show description for 78eb21d
  martinaryee

  committed
  78eb21d

Commits on Nov 25, 2015

• Merge pull request #27 from aryeelab/pep8-compliance

  Show description for 10b02c4
  martinaryee

  committed
  10b02c4

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