Skip to content

Pull requests: bcgsc/ntJoin

New pull request New
Clear current search query, filters, and sorts
0 Open 68 Closed
0 Open 68 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

Filter graph edges based on weight, filter branching nodes
#1 by lcoombe was merged Jun 10, 2019 Loading… updated Jun 10, 2019
@lcoombe
Minimizer position
#2 by lcoombe was merged Jun 19, 2019 Loading… updated Jun 19, 2019
@lcoombe
Add gap estimation code
#5 by lcoombe was merged Jul 17, 2019 Loading… updated Jul 17, 2019
@lcoombe
Add strand information to indexlr
#8 by vlad0x00 was merged Jul 31, 2019 Loading… updated Jul 31, 2019
1
Return + if forward and reverse are the same
#9 by vlad0x00 was merged Jul 31, 2019 Loading… updated Jul 31, 2019
1
Update orientation code
#10 by lcoombe was merged Aug 7, 2019 Loading… updated Aug 7, 2019
@lcoombe
Update filtering enhancement New feature or request
#11 by lcoombe was merged Sep 13, 2019 Loading… updated Sep 13, 2019
@lcoombe
Merge adjacent, collinear intervals
#12 by lcoombe was merged Sep 13, 2019 Loading… updated Sep 13, 2019
@lcoombe
Fix a rare deadlock :D
#13 by vlad0x00 was merged Oct 4, 2019 Loading… updated Oct 4, 2019
1
Add 2 hash generation to indexlr
#14 by vlad0x00 was merged Nov 20, 2019 Loading… updated Nov 20, 2019
1
Add logo to README.md
#15 by lcoombe was merged Dec 19, 2019 Loading… updated Dec 19, 2019
@lcoombe
Remove -fopenmp flag, as openmp is not used
#16 by vlad0x00 was merged Jan 24, 2020 Loading… updated Jan 24, 2020
1
ntjoin_assemble.py: Fix off-by-one error with output scaffolds bug Something isn't working
#18 by lcoombe was merged Jan 31, 2020 Loading… updated Jan 31, 2020
@lcoombe
Add AGP output enhancement New feature or request
#19 by lcoombe was merged Jan 31, 2020 Loading… updated Jan 31, 2020
@lcoombe
ntJoin: Update to handle fasta files with any extension
#21 by lcoombe was merged Feb 4, 2020 Loading… updated Feb 4, 2020
@lcoombe
Make bf query slightly faster
#26 by vlad0x00 was merged Apr 8, 2020 Loading… updated Apr 8, 2020
1
ntjoin_assemble.py: Bugfix to linear path function
#29 by lcoombe was merged Jun 5, 2020 Loading… updated Jun 5, 2020
@lcoombe
Strip terminal gap sequence from unassigned scaffolds
#30 by lcoombe was merged Jun 10, 2020 Loading… updated Jun 10, 2020
@lcoombe
Implement max gap size parameter
#31 by lcoombe was merged Jun 10, 2020 Loading… updated Jun 10, 2020
@lcoombe
Add --id and --bx options
#36 by vlad0x00 was merged Jul 13, 2020 Loading… updated Jul 13, 2020
@vlad0x00
1
Fix for new pylint version
#41 by lcoombe was merged Oct 7, 2020 Loading… updated Oct 7, 2020
@lcoombe
btllib port of indexlr
#40 by vlad0x00 was merged Oct 8, 2020 Loading… updated Oct 8, 2020
4
Fix indexlr for clang
#42 by lcoombe was merged Oct 14, 2020 Loading… updated Oct 14, 2020
@lcoombe
Add verbose option to indexlr
#43 by vlad0x00 was merged Oct 14, 2020 Loading… updated Oct 14, 2020
1
Time, warning fixes
#48 by lcoombe was merged Nov 10, 2020 Loading… updated Nov 10, 2020
ProTip! Find all pull requests that aren't related to any open issues with -linked:issue.