Merge pull request #77 from bigbio/spectrumAI

spectrumAI into py-pgatk

Merge pull request #64 from bigbio/dev

Major changes fixing issues in reading params from configs files

Merge pull request #62 from bigbio/class-fdr

changes in the generation for msrescore

Merge pull request #60 from bigbio/class-fdr

changes to fix problem with config files

Added flag to specify separator in transcript description

Merge pull request #45 from bigbio/dev

Merge pull request #44 from bigbio/dev

decompress gzip files

Updated version to 0.017

Update setup.py

Merge pull request #39 from bigbio/dev

Dev