Update README.md

bzhanglab · Sep 23, 2022 · 65b640b · 65b640b
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Showing 1 changed file with 3 additions and 2 deletions.
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@@ -63,8 +63,9 @@ This file contains numbers of protein(s) of each gene in the protein database.
 ### 2. sepep_mapping_table.txt
 This file descripts mappings between SEPEPs, host gene(s) and host protein(s).
 
-### 3. sepep_matrix.txt
-
+### 3. sepep quantification files
+#### TMT data: It will output both raw (sepep_matrix_raw.txt) and median centered (sepep_matrix_MD.txt) Log2(TMT ratio) for TMT data. 
+#### Label free data: It will output both MS1 intensity and spectral count in a same file.
 
 
 ## Parameters