replaces http://www.webgestalt.org with https://www.webgestalt.org #20
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yxngl
requested changes
Feb 13, 2023
This reverts commit 808bdf1.
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I reverted the last commit, so the latest version is now back to 0.4.5. If it all looks good, you can merge the branch. |
yxngl
approved these changes
Feb 13, 2023
iblacksand
added a commit
that referenced
this pull request
Mar 7, 2024
…ES files. New ORA calculation (#20) * windows target * log10p for meta analysis and fix overlap id for ORA * remove printing * idmapping fixes * fix id mapping * add score check * fix errors with bars * add size start * improve id mapping for metabolites * add null checks * add try to error prone section * bigger block * edit links if possible * fdr fix if equal to 1 * revert broken links * fix bounds * fix multi-list with no descriptions * fix multiora * fix ora gene set des being overridden * add place for no genesetdes * address another black hole * fix error with genesetdes * fix example * fix gene set prob * test meta-p * fix variable name * stop * fix logp calculation * fix nes vals * fix meta-p if only one p_val * fix ora meta logp * better ora signs * better log p for single lists * make gene set null * better logp * only add colnames if success possible * fix negative meta-p * fix hmdb ora coloring * custom two2one' * abs p vals * diagnostics * remove bad filter * remove print * add flips * revert * add better flip * fix flips * fix flips * use paste0 * use new bool_flips * use new variable * use abs for single meta analysis * more small ora fixes * remove bad genetable init * alternative meta * alternative meta * fix starting i * diags * more updates * na check * fix index * add better p value check * fix flips * revert link if needed
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replaces http://www.webgestalt.org with https://www.webgestalt.org in all files to fix issue #19.