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Achievements

Achievement: Pair Extraordinairex4Achievement: Pull Sharkx2Achievement: Arctic Code Vault ContributorAchievement: Starstruckx2

Achievements

Achievement: Pair Extraordinairex4Achievement: Pull Sharkx2Achievement: Arctic Code Vault ContributorAchievement: Starstruckx2

Organizations

@PacificBiosciences @StructuralVariants

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  • rust-htslib Public

    Forked from rust-bio/rust-htslib

    This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.

    Rust MIT License Updated Nov 12, 2024

  • rust-wfa2 Public

    Forked from pairwise-alignment/rust-wfa2

    Rust binding for WFA2-lib

    Rust MIT License Updated Oct 22, 2024

  • WFA2-lib Public

    Forked from smarco/WFA2-lib

    WFA2-lib: Wavefront alignment algorithm library v2

    C Other Updated Oct 22, 2024

  • igv Public

    Forked from igvteam/igv

    Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

    Java MIT License Updated Sep 25, 2024

  • spoa-rs Public

    Forked from nlhepler/spoa-rs

    A rust wrapper for the spoa C++ partial order alignment library

    Rust MIT License Updated Sep 4, 2024

  • rust-libbigwig Public

    Limited rust API to libBigWig for writing bigwig files.

    Rust BSD 3-Clause Clear License Updated Aug 30, 2024

  • bioconda-recipes Public

    Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    Shell MIT License Updated Aug 21, 2024

  • Platinum-Pedigree-Inheritance Public

    Haplotype inheritance filtering of genetic variation

    Jupyter Notebook 1 Other Updated Aug 16, 2024

  • cxx Public

    Forked from dtolnay/cxx

    Safe interop between Rust and C++

    Rust Apache License 2.0 Updated Aug 15, 2024

  • hap-eval Public

    Forked from Sentieon/hap-eval

    A VCF comparison engine for structual variant benchmarking

    Python BSD 2-Clause "Simplified" License Updated Apr 23, 2024

  • bcftools Public

    Forked from samtools/bcftools

    This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html

    C 1 Other Updated Apr 19, 2024

  • truvari Public

    Forked from ACEnglish/truvari

    Structural variant toolkit for VCFs

    Python MIT License Updated Apr 9, 2024

  • abPOA Public

    Forked from yangao07/abPOA

    abPOA: an SIMD-based C library for fast partial order alignment using adaptive band

    C MIT License Updated Jul 23, 2023

  • detect_crt_static Public

    Rust Updated Jun 13, 2023

  • minimal_cxx Public

    Minimal demonstration of cxx static build issue

    Rust Updated Jun 13, 2023

  • ExpansionHunter Public

    Forked from Illumina/ExpansionHunter

    A tool for estimating repeat sizes

    C++ Apache License 2.0 Updated Jun 8, 2023

  • error-stack-demo Public

    Forked from letsgetrusty/error-stack-demo
    Rust Updated Apr 4, 2023

  • tflite-rs Public

    Forked from boncheolgu/tflite-rs
    Rust Apache License 2.0 Updated Sep 9, 2022

  • r4ds Public

    Forked from hadley/r4ds

    R for data science: a book

    R Other Updated Dec 30, 2021

  • strelka Public

    Forked from Illumina/strelka

    Strelka2 germline and somatic small variant caller

    C++ GNU General Public License v3.0 Updated Dec 29, 2021

  • lua-filters Public

    Forked from pandoc/lua-filters

    A collection of lua filters for pandoc

    Lua MIT License Updated Nov 8, 2020

  • pyflow Public

    Forked from Illumina/pyflow

    A lightweight parallel task engine

    Python Updated Jul 1, 2020

  • benchmarking_SV_publication Public

    Forked from Mangul-Lab-USC/benchmarking_SV

    Updated figures for "A benchmarking of WGS-based structural variant callers" paper

    Jupyter Notebook Updated May 6, 2020

  • manta Public

    Forked from Illumina/manta

    Structural variant and indel caller for mapped sequencing data

    C++ GNU General Public License v3.0 Updated Jul 17, 2019

  • rs-sandbox Public

    Rust Updated Jun 22, 2018

  • hts-specs Public

    Forked from samtools/hts-specs

    Specifications of SAM/BAM and related high-throughput sequencing file formats

    TeX Updated Jan 3, 2018

  • htslib Public

    Forked from samtools/htslib

    C library for high-throughput sequencing data formats

    C Other Updated Aug 8, 2017

  • homebrew-science Public

    Forked from Linuxbrew/homebrew-science

    🔬 Scientific formulae for the Homebrew package manager

    Ruby Other Updated Jun 8, 2016

  • sml_galign Public

    Supporting ortholog scripts from "Saunders CT, Green P. Insights from modeling protein evolution with context-dependent mutation and asymmetric amino acid selection."

    Python Updated Jan 1, 2016

  • CodeAxe Public

    Model initially described in "Saunders CT, Green P. Insights from modeling protein evolution with context-dependent mutation and asymmetric amino acid selection."

    C++ Other Updated Jan 1, 2016