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Strain-level haplotyping for metagenomes with short or long-reads.

Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs

Phased assembly variant caller

Genome In A Bottle Development Framework for Assembly Based Benchmarks

Accurate CNV Evaluation Using Telomere-to-Telomere Assemblies

Fast interval intersection library

A method to locate variation clusters

Poisson Binomial Probability Distribution for Python

DWFA consensus algorithm for pb-StarPhase

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

Statistical computation library for Rust

Creating alignment plots from bam files

somatic SV calling on matched tumor-normal co-assembly graphs

Extending lcsk++ to graph to support semiglobal poa

A high-performance BigWig and BigBed library in Rust

An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.

A pairwise sequence aligner written in Rust

Complex structural variant visualization for HiFi sequencing data

Ultimate Plumber is a tool for writing Linux pipes with instant live preview

Structural variant toolkit for VCFs

Structural variant discovery and genotyping from mapped PacBio HiFi data

De novo tandem repeat calling from PacBio HiFi data

Transformer-based sequence correction method for genome assembly polishing

An HLA star-calling tool for PacBio HiFi data types

A complete diploid human genome

A tool for somatic structural variant calling using long reads

DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal and tumor-only sequencing data.

A phase-aware pharmacogenomic diplotyper for PacBio datasets