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59 Open 438 Closed
59 Open 438 Closed
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Issues list

Population /Trio merging snf file - SUPP_VEC=only zeroes
#436 opened Oct 23, 2023 by sofiabanu
@hermannromanek
1
Fully supported CRISPR edit not detected.
#429 opened Sep 25, 2023 by caonetto
3
--sample-id does not work in force calling mode
#427 opened Sep 6, 2023 by biorococo
Why are BNDs filtered differently in primary and supplementary alignments?
#426 opened Sep 6, 2023 by HillJamie
@hermannromanek
svlen vs length of ALT
#424 opened Aug 31, 2023 by jo-mc
2
insertion REF alleles and deletion ALT alleles are always set to "N"
#422 opened Aug 28, 2023 by eblerjana
@hermannromanek
4
output vcf DR correspond to the number of alignments not the read numbers
#418 opened Aug 11, 2023 by ErminZ
BND alt alleles are incorrect - and an attached fix
#413 opened Jul 7, 2023 by HillJamie
Multisample Calling with BND (translocation) variants
#412 opened Jul 5, 2023 by tbenavi1
1
Hard clipping is not fully supported
#409 opened Jun 22, 2023 by HillJamie
Typo in calculating mean_svlen for merging of clusters enhancement
#407 opened Jun 16, 2023 by HillJamie
Possible bug: first cluster can only be merged once
#406 opened Jun 16, 2023 by HillJamie
@hermannromanek
1
VCF output insertions alternative alleles incorrect
#402 opened Jun 2, 2023 by dennishendriksen
Malformed VCF output due to R nucleotide in reference
#401 opened Jun 1, 2023 by dennishendriksen
@hermannromanek
1
DEL detected in germline mode is not detected in non-germline mode enhancement
#399 opened May 25, 2023 by waltergallegog
@lfpaulin
5
Allele depth change on force-calling bug
#386 opened Mar 23, 2023 by Akazhiel
1
Known SV reported in single-sample SV calling, but not in multisample SV calling (de_novo SV)
#383 opened Mar 10, 2023 by prasundutta87
2
difference between SUPPORT and DV
#382 opened Mar 8, 2023 by prasundutta87
8
-b, --bed to call variants only in the provided bed regions
#373 opened Jan 18, 2023 by dennishendriksen
@hermannromanek
4
Inconsistency:Insertion variants length different in the ALT column with sv len. bug
#371 opened Dec 2, 2022 by infotmatician
2
Large DEL filtered by Sniffles enhancement
#367 opened Nov 15, 2022 by ziphra
5
Sniffles2 doesn't call a large deletion that sniffles1 did call
#366 opened Nov 7, 2022 by paulauitt2
3
Two deletions in same region enhancement
#364 opened Oct 26, 2022 by Akazhiel
Incorrect position of BND in some cases
#359 opened Oct 6, 2022 by KoryukovMA
2
query about genotype quality score
#355 opened Sep 13, 2022 by prasundutta87
3
ProTip! Find all open issues with in progress development work with linked:pr.