🧬 Cloudgene 3

A framework to build Software As A Service (SaaS) platforms for data analysis pipelines.

Features

• 🔧 Build your analysis pipeline in your favorite language or use Nextflow
• 📄 Integrate your analysis pipeline into Cloudgene by writing a simple configuration file
• 💡 Get a powerful web application with user management, data transfer, error handling and more
• ⭐ Deploy your application with one click to any SLURM cluster or to public Clouds like Amazon AWS
• ☁️ Provide your application as SaaS to other scientists and handle thousands of jobs like a pro
• 🌎 Share your application and enable everyone to clone your service to its own hardware or private cloud instance

Requirements

You will need the following things properly installed on your computer.

• Java 17 or higher
• MySQL Server (Optional)

Installation

You can install Cloudgene3 using the following command:

curl -fsSL https://get.cloudgene.io | bash

If you don't have curl installed, you could use wget:

wget -qO- https://get.ncloudgene.io | bash

It will create the cloudgene executable file in the current directory.

Test the installation with the following command:

./cloudgene version

Getting started

The hello-cloudgene application can be installed by using the following command:

./cloudgene github-install lukfor/cg-fetchngs

The webserver can be started with the following command:

./cloudgene server

The webservice is available on http://localhost:8082. Please open this address in your web browser and enter as username admin and as password admin1978 to login.

Click on Run to start the application.

The documentation is available at http://docs.cloudgene.io

More examples can be found in genepi/cloudgene-examples.

Cloudgene and Genomics

See Cloudgene in action:

• Michigan Imputation Server
• mtDNA Server
• Laser Server

Developing

More about how to build Cloudgene from source can be found here.

Contact

• Lukas Forer @lukfor
• Sebastian Schönherr @seppinho

License

Cloudgene is licensed under AGPL-3.0.