Delete obsolete snapshots

genepi · Jul 22, 2024 · 356b8ab · 356b8ab
1 parent 486e34e
commit 356b8ab
Showing 1 changed file with 0 additions and 10 deletions.
diff --git a/tests/main.imputation.nf.test.snap b/tests/main.imputation.nf.test.snap
@@ -119,16 +119,6 @@
         },
         "timestamp": "2024-07-17T17:48:12.849582"
     },
-    "Should run with eagle and validate header": {
-        "content": [
-            "[{\"command\":\"LOG\",\"params\":[\"Reference Panel Ranges: genome-wide\"]},{\"command\":\"BEGIN_TASK\",\"params\":[\"Running Calculating QC Statistics...\"]},{\"command\":\"UPDATE_TASK\",\"params\":[\"Calculating QC Statistics [1/1]\\n\\nAnalyze file chr20.R50.merged.1.330k.recode.small.vcf.gz...\",3]},{\"command\":\"END_TASK\",\"params\":[\"Calculating QC Statistics\",0]},{\"command\":\"MESSAGE\",\"params\":[\"\\u003cb\\u003eStatistics:\\u003c/b\\u003e \\nAlternative allele frequency \\u003e 0.5 sites: 2,296\\nReference Overlap: 99.00 %\\nMatch: 7,735\\nAllele switch: 0\\nStrand flip: 0\\nStrand flip and allele switch: 0\\nA/T, C/G genotypes: 0\\n\\u003cb\\u003eFiltered sites:\\u003c/b\\u003e \\nFilter flag set: 0\\nInvalid alleles: 0\\nMultiallelic sites: 0\\nDuplicated sites: 0\\nNonSNP sites: 0\\nMonomorphic sites: 11\\nAllele mismatch: 0\\nSNPs call rate \\u003c 90%: 0\",0]},{\"command\":\"MESSAGE\",\"params\":[\"Excluded sites in total: 11\\nRemaining sites in total: 7,735\\nSee snps-excluded.txt for details\\nTyped only sites: 78\\nSee typed-only.txt for details\\n\",2]}]"
-        ],
-        "meta": {
-            "nf-test": "0.9.0-rc2",
-            "nextflow": "24.04.2"
-        },
-        "timestamp": "2024-06-28T10:46:28.955952"
-    },
     "Should run with eagle from hg38 to hg38": {
         "content": [
             "::log:: Reference Panel Ranges: genome-wide\n::message:: Calculating QC Statistics\n::group type=message::\n<b>Statistics:</b>\nAlternative allele frequency > 0.5 sites: 2,296\nReference Overlap: 99.00 %\nMatch: 7,735\nAllele switch: 0\nStrand flip: 0\nStrand flip and allele switch: 0\nA/T, C/G genotypes: 0\n<b>Filtered sites:</b>\nFilter flag set: 0\nInvalid alleles: 0\nMultiallelic sites: 0\nDuplicated sites: 0\nNonSNP sites: 0\nMonomorphic sites: 11\nAllele mismatch: 0\nSNPs call rate < 90%: 0\n::endgroup::\n::group type=warning::\nExcluded sites in total: 11\nRemaining sites in total: 7,735\nSee snps-excluded.txt for details\nTyped only sites: 78\nSee typed-only.txt for details\n\n::endgroup::\n"