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configs Public
Forked from nf-core/configsConfig files used to define parameters specific to compute environments at different Institutions
Nextflow MIT License UpdatedDec 30, 2024 -
references Public
Forked from nf-core/referencesmanaging reference genomes via nextflow
Nextflow MIT License UpdatedNov 20, 2024 -
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modules Public
Forked from nf-core/modulesRepository to host tool-specific module files for the Nextflow DSL2 community!
Nextflow MIT License UpdatedJan 9, 2024 -
quantms Public
Forked from bigbio/quantmsQuantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.
Nextflow MIT License UpdatedSep 6, 2023 -
taxprofiler Public
Forked from nf-core/taxprofilerHighly parallelised multi-taxonomic profiling of shotgun and long-read metagenomic data
Nextflow MIT License UpdatedJul 31, 2023 -
pb-human-wgs-workflow-snakemake Public
Forked from PacificBiosciences/pb-human-wgs-workflow-snakemakeWorkflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads
Python BSD 3-Clause Clear License UpdatedFeb 12, 2023 -
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funMotifs Public
Forked from komorowskilab/funMotifsA framework for annotating transcription factor motifs
Python MIT License UpdatedSep 25, 2022 -
ProteoWorks Public
Workshops for Proteomics Data Analysis Tasks by Bioinformaticians at Lehtio Lab
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gffutils Public
Forked from daler/gffutilsGFF and GTF file manipulation and interconversion
Python MIT License UpdatedJan 26, 2022 -
LongQC Public
Forked from yfukasawa/LongQCLongQC is a tool for the data quality control of the PacBio and ONT long reads.
C MIT License UpdatedJul 25, 2021 -
pgdb-manuscript Public
Forked from ypriverol/pgdb-manuscriptJupyter Notebook BSD 2-Clause "Simplified" License UpdatedMay 4, 2021 -
pgdb Public
Forked from nf-core/pgdbThe ProteoGenomics database generation workflow creates different protein databases for ProteoGenomics data analysis.
Nextflow MIT License UpdatedApr 27, 2021 -
pancancer_analysis Public
Scripts used to analyse the PCAWG datasets
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proteogenomics-analysis-workflow Public
Forked from lehtiolab/proteogenomics-analysis-workflowIPAW: a Nextflow workflow for proteogenomics
Groovy UpdatedFeb 5, 2020 -
msstitch Public
Forked from lehtiolab/msstitchMS proteomics post-processing utilities
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regDriver Public
regDriver detect functional somatic mutaionts
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pgatk Public
Forked from bigbio/pgatkPGATK: ProteoGenomics Analysis ToolKit
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funMotifsShinyApp Public
Forked from komorowskilab/funMotifsShinyAppShiny app code for the funMotifs database web interface
R UpdatedMay 9, 2019 -
PFMS Public
Forked from komorowskilab/PFMSPeak-finder meta server for ChIP-seq data analaysis
C GNU General Public License v3.0 UpdatedMay 9, 2019 -
TPIC2017 Public
Forked from social-media-prediction/TPIC2017TPIC: A social media dataset for temporal popularity prediction
UpdatedMar 27, 2019 -
nf-core-dda-quant-proteomics Public
Forked from glormph/nf-core-dda-quant-proteomicsQuant proteomics as practiced at Lehtiö lab for NF-core
Nextflow MIT License UpdatedMar 1, 2019 -
tfNet Public
Forked from komorowskilab/tfNettfNet is a computational tool that identifies putative regulatory regions and genomic signal interactions in a genome-wide scale.
C# UpdatedJan 22, 2019 -
proteogenomics_python Public
Forked from yafeng/proteogenomics_pythonpython scripts for proteogenomics analysis
Python UpdatedOct 29, 2018 -
lehtiolab.github.io Public
Forked from lehtiolab/old_websiteLehtiolab website
HTML MIT License UpdatedJul 17, 2018 -
PFMS_p Public
Peak-finder meta server for ChIP-seq data analaysis
C GNU General Public License v3.0 UpdatedJun 27, 2018 -
Sarek Public
Forked from nf-core/sarekDetect germline or somatic variants from normal or tumour/normal whole-genome sequencing data
Nextflow MIT License UpdatedMay 22, 2018 -