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SGSS
COVID-19 Second Generation Surveillance System (SGSS) - Demographic and diagnostic information concerning antigen test reports for COVID-19, in England only. This dataset currently includes the first positive results from Pillar 1 (swab testing in PHE and NHS hospital labs), and Pillar 2 (swab testing for the wider population). Future flows are anticipated to include all positive, negative, void and inconclusive test results. This would mean the asset would no longer be limited to just be the first positive results. The NHS Digital SGSS asset is NHS Digital’s only source for Pillar 1 testing data. Pillar 2 testing data is also available to request as a separate product.
SGSS is an application that stores and manages data on laboratory isolates and notifications, and is the preferred method for capturing routine laboratory surveillance data on infectious diseases and antimicrobial resistance from diagnostic laboratories across England. The data is stored in a central database within PHE, and made available to a wide range of users within and outwith the organisation, subject to robust access control mechanisms.
Consult our own Metadata Catalogue for the SGSS main table.
Web references:
Contents
ISARIC
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Additional Fields
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Case Report Form Definitions
- Participant Identification Number (PIN)
- Tier
- Inclusion Criteria
- Demographics
- Onset and Admission
- Admission Signs and Symptoms
- Comorbidities
- Preadmission Treatment
- Preadmission Medication
- Reinfection Form
- Daily Form
- Infectious Respiratory Disease Pathogen Diagnosis
- Infectious Respiratory Disease Pathogen Testing
- Treatment
- Complications
- Study Participation
- Outcome
- Final Outcome
- Core Additional Information
- Withdrawal Form
- Consent Ctu Dms
- Confirmed Negative PCR
- Follow up Consent
- Follow up Self Assessment
PHOSP
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Additional Fields
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Case Report Form Definitions
- Forms
- Timepoints
- PHOSP ID
- eConsent Tier 1
- eConsent Tier 2
- Informed Consent Form
- Split Tier Consent
- Eligibility Checklist
- CRF1A Part 1
- CRF1A Part 2
- CRF1A Part 3
- CRF1B
- CRF2A
- CRF2B
- CRF3A
- CRF3B
- CRF3C
- CRF4A
- CRF4B
- CRF Emergency Visit
- Adverse Event Log
- Withdrawals
- CRF Early Termination
- CRF Tier 2 Withdrawal
- Medications Log
- Activity Monitor Log
- Mental Health Assessment
- Nutrition
- Social History
- EQ-5D-5L
- GAD-7
- PHQ-9
- MRC Dyspnoea
- SARC-F
- GPPAQ
- Dyspnoea-12
- FACIT Fatigue
- PCL-5
- BPI
- NEADL
- MoCA
- Rockwood Clinical Frailty
- PSQI
- MEQ
- LCQ
- PFTs
- Walk Tests
- Tier 2 Core Test Checklist
- Tier 2 Research Samples
- Tier 2 Notification - Blood
- Tier 2 Notification - Oral Wash
- Tier 2 Notification - Sputum
- Tier 2 Notification - Urine
- QRISK3
- BIA
- DXA
- Muscle Strength
- SPPB
- Pre-PSQ
- PSQ
- Lab Log - Routine Blood
- Lab Log - Urine
- Lab Log - Immuno
- Lab Log - Additional Tests
- PCR Swab Tests
GPES
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Table Definitions
APC
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Additional Fields
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Table Definitions
IAPT
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Additional Fields
AE
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Additional Fields
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Table Definitions
NIMS
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Additional Fields
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Table Definitions
ECDS
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Additional Fields
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Table Definitions
MHS
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Additional Fields
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Table Definitions
- MHS Master Patient Index table
- MHS GP data table
- NHS Accommodation status table
- MHS Employment status table
- MHS Patient Ind table
- MHS MH Care Coord table
- MHS Disability type table
- MHS Care plan type table
- MHS Care plan arrangement table
- MHS Assistive technology to support disability type table
- MHS Social and Personal Circumstances table
- MHS Overseas Visitor Charging Category table
- MHS Service or Team Referral table
- MHS Service or Team Type Referred To table
- MHS Other Reason for Referral table
- MHS Referral to Treatment table
- MHS Onward Referral table
- MHS Discharge Plan Agreement table
- MHS Care Contact table
- MHS Care Activity table
- MHS Other in Attendance table
- MHS Indirect Activity table
- MHS Medical History (Previous Diagnosis) table
- MHS Provisional Diagnosis table
- MHS Primary Diagnosis table
- MHS Secondary Diagnosis table
- MHS Coded Scored Assessment (Referral) table
- MHS Coded Scored Assessment (Care Activity) table
- MHS Care Programme Approach (CPA) Care Episode table
- MHS Care Programme Approach (CPA) Review table
NDA
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SGSS
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Additional Fields
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Table Definitions
GDPPR
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Additional Fields
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Table Definitions
VACCINATION
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Additional Fields
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Table Definitions
COG_UK
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Additional Fields
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Table Definitions
COG_UK_VOC
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Additional Fields
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Table Definitions
CHESS
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Additional Fields
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Table Definitions
SGTF
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Additional Fields
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Table Definitions
CIVIL_REG_DEATHS
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Additional Fields
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Table Definitions