Hands-on training in web-based data-mining resources for fungal genomes

A collection of recipes to start scripting in the linux command line

Bioinformatics Pipeline and Visualization resources

The source code demos for the yFiles for HTML diagramming library

Training materials for staff and community members

Singularity and Docker material

This is a repository for development of the SARS-CoV-2 Bioinformatics for Beginners Course

Using Git and GitHub with R, Rstudio, and R Markdown

InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..

A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019

Workflow for SARS-CoV-2 genome Assembly at FioCruz/IAM

Specification for the Workflow Description Language (WDL).

Source code and related materials for the O'Reilly book

Lecture notes for a course on genomic surveillance of malaria vectors, developed by PAMCA and MalariaGEN

Removal of human reads from ncov nanopore sequencing data

Google Colab notebook to run basic Nextflow commands and use a VS Code server session

Course materials for an introduction to SARS-CoV-2 sequencing data analysis

Systematic ProtEin AnnotatoR

A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019

List of Computer Science courses with video lectures.

resources for learning bioinformatics

Plugins for the Ensembl Variant Effect Predictor (VEP)

African Genomics Precision Medicine Portal

Scripts for recalling several available datasets. The final output will be used by different H3A projects, e.g. ADME, refpanel. An improved fork of this repos is here: https://github.com/grbot/varcall

Lollipop-style mutation diagrams for annotating genetic variations.

African Precision Medicine Portal