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  • hapmers Public

    Typst 1 MIT License Updated Oct 23, 2024

  • rGO2TR Public

    R GNU General Public License v2.0 Updated Sep 5, 2024

  • scicommander Public

    Forked from samuell/scicommander

    Run shell commands in a scientifically reproducible and robust way

    Go MIT License Updated Sep 3, 2024

  • julia-bio Public

    some JuliaLang bioinformatics scripts in the form of gists

    1 MIT License Updated Sep 2, 2024

  • Mycelia Public

    Forked from cjprybol/Mycelia
    Jupyter Notebook MIT License Updated Jul 4, 2024

  • hac-to-duplex Public

    Python 4 MIT License Updated May 23, 2024

  • jovian Public

    Forked from brendanofallon/jovian

    Detecting variants in NGS short read data by sequence-to-sequence modeling

    Python Other Updated Apr 15, 2024

  • vcfdist Public

    Forked from TimD1/vcfdist

    vcfdist: Accurately benchmarking phased variant calls

    C++ GNU General Public License v3.0 Updated Mar 22, 2024

  • XAM.jl Public

    Forked from BioJulia/XAM.jl

    Parse and process SAM and BAM formatted files

    Julia MIT License Updated Mar 11, 2024

  • ULPwgs Public

    Forked from TearsWillFall/ULPwgs

    Utility tool that integrates commonly used bioinformatic tools for ULP-WGS analysis

    R GNU General Public License v3.0 Updated Jan 29, 2024

  • herro Public

    Forked from lbcb-sci/herro

    HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1, Kit 14, Ultra-long (UL) reads.

    Rust Other Updated Jan 23, 2024

  • vechat Public

    Forked from HaploKit/vechat

    Correcting errors in noisy long reads using variation graphs

    C++ GNU General Public License v3.0 Updated Jan 23, 2024

  • VNtyper Public

    Forked from hassansaei/VNtyper

    A tool to genotype MUC1 coding VNTR in ADTKD

    Python Updated Dec 28, 2023

  • chopper Public

    Forked from wdecoster/chopper
    Rust MIT License Updated Oct 20, 2023

  • MultiPL-E Public

    Forked from nuprl/MultiPL-E

    A multi-programming language benchmark for evaluating the performance of large language model of code.

    Python Other Updated Oct 13, 2023

  • podman Public

    Forked from containers/podman

    Podman: A tool for managing OCI containers and pods.

    Go Apache License 2.0 Updated Sep 13, 2023

  • etc Public

    Python MIT License Updated Aug 10, 2023

  • zig-bio Public

    Place to put some zig-related sequencing bioinformatics source codee

    Zig 4 1 Updated Mar 22, 2023

  • genomes Public

    genome assembly and annotation scripts

    MIT License Updated Mar 7, 2023

  • stRainy Public

    Forked from katerinakazantseva/strainy

    Graph-based assembly phasing

    Python Other Updated Feb 7, 2023

  • APA-Scan Public

    Forked from compbiolabucf/APA-Scan

    Detection and visualization of annotated and potential Alternative Polyadenylation events

    Python Updated Jan 30, 2023

  • rust-bk-tree Public

    Forked from eugene-bulkin/rust-bk-tree

    A BK-tree implementation in Rust.

    Rust MIT License Updated Dec 28, 2022

  • meson-python Public

    Forked from mesonbuild/meson-python

    Meson PEP 517 Python build backend

    Python MIT License Updated Oct 25, 2022

  • alphafold Public

    Forked from google-deepmind/alphafold

    Open source code for AlphaFold.

    Python Apache License 2.0 Updated Sep 22, 2022

  • bbmap-graal Public

    MIT License Updated Aug 23, 2022

  • CRISPR-LICHT Public

    MIT License Updated Aug 22, 2022

  • immunome_urtd Public

    Python MIT License Updated Aug 12, 2022

  • variant-calling Public

    MIT License Updated Aug 12, 2022

  • immunome_2014 Public

    TeX 1 1 MIT License Updated Aug 12, 2022

  • transcriptomics Public

    MIT License Updated Aug 12, 2022