johnarevalo
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vim-slime Public
Forked from jpalardy/vim-slimeA vim plugin to give you some slime. (Emacs)
Vim Script MIT License UpdatedOct 16, 2024 -
channel_adaptive_models Public
Forked from chaudatascience/channel_adaptive_modelsCHAMMI: A benchmark for channel-adaptive models in microscopy imaging
Python UpdatedSep 26, 2024 -
scib-metrics Public
Forked from YosefLab/scib-metricsAccelerated, Python-only, single-cell integration benchmarking metrics
Python BSD 3-Clause "New" or "Revised" License UpdatedSep 24, 2024 -
jump-profiling-recipe Public
Forked from broadinstitute/jump-profiling-recipeWorkflow for processing cpg0016-jump profiles
Python BSD 3-Clause "New" or "Revised" License UpdatedSep 17, 2024 -
scib Public
Forked from theislab/scibBenchmarking analysis of data integration tools
Python MIT License UpdatedAug 7, 2024 -
harmonypy Public
Forked from slowkow/harmonypy🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.
Python GNU General Public License v3.0 UpdatedJul 11, 2024 -
rainbow_csv Public
Forked from mechatroner/rainbow_csv🌈Rainbow CSV - Vim plugin: Highlight columns in CSV and TSV files and run queries in SQL-like language
Python MIT License UpdatedJun 21, 2024 -
cytoskel Public
Forked from broadinstitute/cytoskelCloud infrastrcuture abstraction
Python BSD 3-Clause "New" or "Revised" License UpdatedJun 13, 2024 -
desc Public
Forked from eleozzr/descDeep Embedding for Single-cell Clustering
Jupyter Notebook UpdatedApr 9, 2024 -
copairs Public
Forked from cytomining/copairsFind pairs and compute metrics between them.
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panoptes Public
Forked from panoptes-organization/panoptesMonitor computational workflows in real time
CSS MIT License UpdatedNov 26, 2023 -
vim-snakemake Public
git-filter-repo for https://github.com/snakemake/snakemake/tree/main/misc/vim folder
Vim Script UpdatedNov 8, 2023 -
A Fast, Extensible Progress Bar for Python and CLI
Python Other UpdatedOct 3, 2023 -
cytods Public
Forked from cytodata/cytodata.github.ioCytoData Society website
HTML MIT License UpdatedSep 10, 2023 -
DeepCCA Public
Forked from Michaelvll/DeepCCAAn implementation of Deep Canonical Correlation Analysis (DCCA or Deep CCA) with pytorch.
Python Other UpdatedAug 24, 2023 -
compound-annotator Public
Forked from jump-cellpainting/compound-annotatorJupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedAug 15, 2023 -
pytdc-feedstock Public
Forked from conda-forge/pytdc-feedstockA conda-smithy repository for pytdc.
BSD 3-Clause "New" or "Revised" License UpdatedJun 7, 2023 -
gmu-mmimdb Public
Source code for training Gated Multimodal Units on MM-IMDb dataset
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scanpy Public
Forked from scverse/scanpySingle-cell analysis in Python. Scales to >1M cells.
Python BSD 3-Clause "New" or "Revised" License UpdatedMar 29, 2023 -
revealjs.com Public
Forked from reveal/revealjs.comThe official reveal.js website and documentation
JavaScript UpdatedJan 25, 2023 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedJan 19, 2023 -
pycytominer Public
Forked from cytomining/pycytominercytominer python package
Python BSD 3-Clause "New" or "Revised" License UpdatedJan 13, 2023 -
intervaltree-feedstock Public
Forked from conda-forge/intervaltree-feedstockA conda-smithy repository for intervaltree.
BSD 3-Clause "New" or "Revised" License UpdatedNov 17, 2022 -
intervaltree Public
Forked from chaimleib/intervaltreeA mutable, self-balancing interval tree. Queries may be by point, by range overlap, or by range containment.
Python Apache License 2.0 UpdatedNov 15, 2022 -
JUMP-Target Public
Forked from jump-cellpainting/JUMP-TargetLists and 384-well plate maps of compounds and genetic perturbations designed to assess connectivity in profiling assays
MIT License UpdatedDec 14, 2021 -
DeepProfiler Public
Forked from cytomining/DeepProfilerMorphological profiling using deep learning
Python Other UpdatedNov 4, 2021 -
neurips-cpjump1 Public
Forked from jump-cellpainting/2024_Chandrasekaran_NatureMethodsJupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedOct 7, 2021 -
CellProfiler Public
Forked from CellProfiler/CellProfilerAn open-source application for biological image analysis
Python Other UpdatedAug 27, 2021