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Commits on Jan 29, 2016

• revert a version close to r104

  lh3

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  a46399a

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• removed chimeric detection - not working as intend

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  committed
  2141dc6

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Commits on Jan 27, 2016

• optionally discard weak overlap (not by default)

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  committed
  03e24ea

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Commits on Jan 25, 2016

• keep and output the matching ratio

  lh3

  committed
  17d5bd1

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• use matching length for short overlap removal

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  committed
  3d40171

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Commits on Dec 21, 2015

• r137: chimeric depth cutoff depends on mindp

  lh3

  committed
  ecb3167

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• r136: don't use coverage-based triming

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Commits on Dec 20, 2015

• code backup

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  e2b0376

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Commits on Dec 19, 2015

• r131: optionally prefilter contained reads

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Commits on Dec 7, 2015

• r129: a few minor compiling issues

  lh3

  committed
  0e3a5c5

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Commits on Nov 19, 2015

• r100: apply another round of short ovlp removal

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  committed
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Commits on Nov 17, 2015

• r92: make min_dp in 2nd-round filtering not so low

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  committed
  5f5c00e

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Commits on Nov 14, 2015

• r86: added -B

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  committed
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Commits on Nov 7, 2015

• r46: a hidder parameter; added Loman ont2d data

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  committed
  6110829

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• r45: multi rounds of short ovlp removal

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Commits on Nov 6, 2015

• backup

  lh3

  committed
  a521ece

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• store hits with low identity

  lh3

  committed
  a25612f

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• backup

  lh3

  committed
  34fbc5c

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• added back end clip

  lh3

  committed
  57ba4ed

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• two round filtering

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  8a4b113

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Commits on Nov 5, 2015

• backup

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  9715bc8

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• backup

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  56d80a3

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• backup

  lh3

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  cd94ee1

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• code cleanup

  lh3

  committed
  bfe68cc

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• backup

  lh3

  committed
  f68403b

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• backup

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  7433467

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• backup

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