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Commits on Sep 3, 2021

• add 07_prep_for_shinyDepMap/export_source_data.r

  kenichi-shimada

  committed
  b304412

• Merge branch 'various_mix' of https://github.com/kenichi-shimada/depmap-analysis into various_mix

  kenichi-shimada

  committed
  d7316fd

• modified 07_prep_for_shinyDepMap/compile_loading_data_19q3.r

  kenichi-shimada

  committed
  c8cef26

• modified fig1a_fig2ab.r

  kenichi-shimada

  committed
  447f43b

Commits on Feb 13, 2021

• Codes for eLife manuscript

  kenichi-shimada

  authored
  cc6a552

Commits on Dec 24, 2020

• updated to describe changes with mixing ratios

  kenichi-shimada

  committed
  041a8a2

• updated to describe changes with mixing ratios

  kenichi-shimada

  committed
  5672dc7

• updated to describe changes with mixing ratios

  kenichi-shimada

  committed
  700486d

• repositor for custom functions

  kenichi-shimada

  committed
  026b0e2

• generated data for shinyDepMap

  kenichi-shimada

  committed
  0731de3

• readded echodots README

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  committed
  5184f9d

• removed README for echodots

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  committed
  5b12ee1

• generated connectivity plot

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  committed
  2074248

• computed cluster hierarchy

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  committed
  1ec4d19

• deleted old files

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  committed
  d54022f

• renamed summary_cluster

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  committed
  06e709b

• removed incomplete analysis

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  committed
  f47ecc9

• assembled clusters

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  committed
  866479d

• computed t-SNE and dbscan for each mixing ratio

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  committed
  7f7b9eb

• compute gsea on efficacy and selectivity

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  committed
  67c99e7

• renamed plot_stepfun.r

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  committed
  3ab7e07

• applied ADaM2 algorithm to compute lineage-dependent and common essential genes

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  committed
  c2c3acf

• generated plots associated with eff/sel

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  committed
  6a54031

• renamed file

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  committed
  b34f0ce

• determined lowest quantile thres

  kenichi-shimada

  committed
  b8d0c26

• computed computed essential genes based CRISPR- or shRNA-only scores

  kenichi-shimada

  committed
  7874b52

• computed ef.sel and selective genes

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  committed
  b483760

• deleted fig.2c.r

  kenichi-shimada

  committed
  17c551d

• computed fig.2c

  kenichi-shimada

  committed
  96b2fc2

• computed coefs for multiple quantile thresholds

  kenichi-shimada

  committed
  7896a7c

• modified to compute essential genes for various quantile threshold

  kenichi-shimada

  committed
  d5d4c2c

• changed the score object 'ed' from a matrix to a data frame

  kenichi-shimada

  committed
  19e1944

• compared discrepant genes between CRISPR and shRNA

  kenichi-shimada

  committed
  85f6a97

Commits on Sep 5, 2020

• modify find_ess_genes

  kenichi-shimada

  committed
  d0fb413

• add score_calculations.r

  kenichi-shimada

  committed
  bfd3dd7

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