update website

kevinlkx · Oct 6, 2023 · ebff0ac · ebff0ac
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diff --git a/README.md b/README.md
@@ -61,7 +61,7 @@ genomic annotations.
 
 Partitioning finemapping PIPs by annotation categories.
 
-### [Making track plots](https://xinhe-lab.github.io/mapgen/articles/partition_pip_tutorial.html)
+### [Making track plots](https://xinhe-lab.github.io/mapgen/articles/track_plot_tutorial.html)
 
 Making track plots of GWAS, finemapping, and annotation data using
 `Gviz` package.

diff --git a/_pkgdown.yml b/_pkgdown.yml
@@ -21,7 +21,7 @@ navbar:
         href: articles/finemapping_tutorial.html
       - text: Gene mapping
         href: articles/gene_mapping_tutorial.html
-      - text: Partition fine-mapping PIPs by annotation categories
+      - text: PIP partitioning by annotation categories
         href: articles/partition_pip_tutorial.html
       - text: Making track plots
         href: articles/track_plot_tutorial.html

diff --git a/docs/404.html b/docs/404.html
diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html
diff --git a/docs/LICENSE.html b/docs/LICENSE.html
diff --git a/docs/articles/data_preparation_tutorial.html b/docs/articles/data_preparation_tutorial.html
diff --git a/docs/articles/enrichment_tutorial.html b/docs/articles/enrichment_tutorial.html
diff --git a/docs/articles/finemapping_tutorial.html b/docs/articles/finemapping_tutorial.html
diff --git a/docs/articles/gene_mapping_tutorial.html b/docs/articles/gene_mapping_tutorial.html
diff --git a/docs/articles/gene_mapping_tutorial_files/figure-html/gene-manhattan-plot-1.png b/docs/articles/gene_mapping_tutorial_files/figure-html/gene-manhattan-plot-1.png
diff --git a/docs/articles/index.html b/docs/articles/index.html
diff --git a/docs/articles/partition_pip_tutorial.html b/docs/articles/partition_pip_tutorial.html
diff --git a/docs/articles/track_plot_tutorial.html b/docs/articles/track_plot_tutorial.html
diff --git a/docs/authors.html b/docs/authors.html
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -8,7 +8,7 @@ articles:
   gene_mapping_tutorial: gene_mapping_tutorial.html
   partition_pip_tutorial: partition_pip_tutorial.html
   track_plot_tutorial: track_plot_tutorial.html
-last_built: 2023-10-06T03:48Z
+last_built: 2023-10-06T03:57Z
 urls:
   reference: https://xinhe-lab.github.io/mapgen/reference
   article: https://xinhe-lab.github.io/mapgen/articles

diff --git a/docs/reference/assign_snp_locus.html b/docs/reference/assign_snp_locus.html
diff --git a/docs/reference/block_view_summary.html b/docs/reference/block_view_summary.html
diff --git a/docs/reference/clean_sumstats.html b/docs/reference/clean_sumstats.html
diff --git a/docs/reference/compute_gene_pip.html b/docs/reference/compute_gene_pip.html
diff --git a/docs/reference/extract_gene_level_result.html b/docs/reference/extract_gene_level_result.html
diff --git a/docs/reference/find_nearest_genes.html b/docs/reference/find_nearest_genes.html
diff --git a/docs/reference/gene_cs.html b/docs/reference/gene_cs.html
diff --git a/docs/reference/gene_manhattan_plot.html b/docs/reference/gene_manhattan_plot.html
diff --git a/docs/reference/gene_view_summary.html b/docs/reference/gene_view_summary.html
diff --git a/docs/reference/get_locus_level_gene_pip.html b/docs/reference/get_locus_level_gene_pip.html
diff --git a/docs/reference/index.html b/docs/reference/index.html
diff --git a/docs/reference/make_genomic_annots.html b/docs/reference/make_genomic_annots.html
diff --git a/docs/reference/match_gwas_bigsnp.html b/docs/reference/match_gwas_bigsnp.html
diff --git a/docs/reference/merge_susie_sumstats.html b/docs/reference/merge_susie_sumstats.html
diff --git a/docs/reference/nearby_interactions.html b/docs/reference/nearby_interactions.html
diff --git a/docs/reference/partition_pip_annots.html b/docs/reference/partition_pip_annots.html
diff --git a/docs/reference/partition_pip_regions.html b/docs/reference/partition_pip_regions.html
diff --git a/docs/reference/pipe.html b/docs/reference/pipe.html
diff --git a/docs/reference/prepare_susie_data_with_torus_result.html b/docs/reference/prepare_susie_data_with_torus_result.html
diff --git a/docs/reference/prepare_torus_input_files.html b/docs/reference/prepare_torus_input_files.html
diff --git a/docs/reference/process_ABC.html b/docs/reference/process_ABC.html
diff --git a/docs/reference/process_finemapping_sumstats.html b/docs/reference/process_finemapping_sumstats.html
diff --git a/docs/reference/process_gwas_sumstats.html b/docs/reference/process_gwas_sumstats.html
diff --git a/docs/reference/process_pcHiC.html b/docs/reference/process_pcHiC.html
diff --git a/docs/reference/run_finemapping.html b/docs/reference/run_finemapping.html
diff --git a/docs/reference/run_torus.html b/docs/reference/run_torus.html
diff --git a/docs/reference/snp_view_summary.html b/docs/reference/snp_view_summary.html
diff --git a/docs/reference/structure_plot.html b/docs/reference/structure_plot.html