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Commits on Nov 4, 2022

• Search MS2 spectra without charge states (lazear#29)

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  lazear

  committed
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Commits on Oct 28, 2022

• Enable multipart upload

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  lazear

  committed
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• Initial support for async read/write to S3

  lazear

  committed
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Commits on Oct 19, 2022

• Refactor, use anyhow::Result

  lazear

  committed
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• Reverse peptides instead of reversing proteins - enable picked-peptide TDC

  lazear

  committed
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• LFQ: peak picking, etc

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  lazear

  committed
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Commits on Oct 13, 2022

• Specify some parameters from the CLI (lazear#19)

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  wfondrie

  authored
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Commits on Sep 27, 2022

• Add fasta file for 'tests/config.json' (lazear#13)

  lazear

  committed
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Commits on Sep 14, 2022

• Address lazear#10, remove kind field from Theoretical

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  lazear

  committed
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Commits on Sep 7, 2022

• Add installation instructions to README (lazear#11)

  lazear

  committed
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Commits on Sep 4, 2022

• clean up

  lazear

  committed
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Commits on Sep 3, 2022

• Refactor digest, enable assignment to multiple proteins

  lazear

  committed
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• Peptide uniqueness, protein assigments, digest index

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  lazear

  committed
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• LDA features

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  lazear

  committed
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• Improve Quant UX

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  lazear

  committed
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• MS3-TMT quant

  lazear

  committed
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• SPS purity calculation

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  lazear

  committed
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Commits on Aug 30, 2022

• Fix test, clippy lints

  lazear

  committed
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Commits on Aug 7, 2022

• Add new features: longest b- and y- ion series, performance improvements

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  lazear

  committed
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Commits on Aug 6, 2022

• Move scoring into sage library

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  lazear

  committed
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• Add deisotoping

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  lazear

  committed
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Commits on Aug 3, 2022

• Update params, benchmarks

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  lazear

  committed
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Commits on Aug 2, 2022

• Use mzML, pre-concatenated database

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  lazear

  committed
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Commits on Jul 27, 2022

• Modify some input parameters

  lazear

  committed
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Commits on Jul 26, 2022

• Rayon performance differs on unix/windows systems

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  lazear

  committed
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• Use peptide index instead of precursor_mz

  lazear

  committed
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Commits on Jul 23, 2022

• Change digest, N-term mods (lazear#3)

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  lazear

  committed
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Commits on Jul 22, 2022

• Add in additional parameters

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  lazear

  committed
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Commits on Jul 21, 2022

• Additional tests, docs, critical bug fix in IndexedQuery

  lazear

  committed
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Commits on Jul 20, 2022

• Change integration tests to use ms2 files

  lazear

  committed
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• Move poetry files to tests/

  lazear

  committed
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• add python script for downloading PXD data and writing MS2 files

  lazear

  committed
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• Add in some integration tests

  lazear

  committed
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