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  • FlowMol Public

    Forked from Dunni3/FlowMol

    Mixed continous/categorical flow-matching model for de novo molecule generation.

    Jupyter Notebook 1 MIT License Updated Dec 21, 2024

  • CpGWAS Public

    Tools to support Methylome-wide Association Studies (MWAS), not to be confused with Metabolome-Wide Association Studies (the other MWAS)

    Jupyter Notebook GNU General Public License v3.0 Updated Nov 6, 2024

  • data_manifest Public

    Obtain data manifest to support organization of large data banks

    Python Updated Oct 10, 2024

  • ConStruct Public

    Forked from manuelmlmadeira/ConStruct

    Code for the paper "Generative Modelling of Structurally Constrained Graphs"

    Python Updated May 28, 2024

  • GMOnotebook Public

    Templates for workflows cross-analyzing fluorescent hyperspectral regression with deep segmentation to study plant tissue culture transformation rates

    Jupyter Notebook 1 1 Updated Apr 2, 2024

  • GMOlabeler Public

    Python/R code for cross-analyzing fluorescence and semantic segmentation results to calculate statistics for development of specific transgenic plant tissues

    R Updated Feb 7, 2024

  • InPlantaGWAS Public

    Jupyter Notebook 2 Updated Jan 19, 2024

  • elastictorch Public

    Pytorch implementation of ElasticNet, intended for investigative benchmarking at this time.

    Python Updated Jan 3, 2024

  • factorimg Public

    Simple Python package to evaluate color palettes in semantic segmentation masks

    Jupyter Notebook BSD 3-Clause "New" or "Revised" License Updated Dec 25, 2023

  • DenseNet Public

    Forked from Contamination-Classification/DenseNet

    Contamination Classification DenseNet

    Python Updated Dec 24, 2023

  • cubeglm Public

    Python implementation of general linear model for quantifying fluorophores in fluorescent hyperspectral images

    Jupyter Notebook 4 BSD 3-Clause "New" or "Revised" License Updated Dec 24, 2023

  • terminal_jupyter_intro Public

    Introduction tutorial for command line basics

    Updated Dec 13, 2023

  • cubeml Public

    Interface to apply machine learning to segmentation of hyperspectral images (hypercubes)

    Jupyter Notebook BSD 3-Clause "New" or "Revised" License Updated Dec 12, 2023

  • GMOGUI Public

    Graphical interface for the high-throughput phenotyping of plant transformation and regeneration (GMOdetector)

    BSD 3-Clause "New" or "Revised" License Updated Nov 22, 2023

  • T-LOC Public

    Forked from sfli001/T-LOC
    R Updated Aug 27, 2023

  • mtmcskat Public

    Cluster-friendly interface for SKAT with adaptive resampling, multi-threading over SNP windows and permutations, and higher-level parallelization over chromosomes/scaffolds.

    R 4 GNU General Public License v3.0 Updated Aug 21, 2023

  • gpt-revcomp-eval Public

    Evals for GPT model abilities to provide reverse complements of DNA sequences

    Jupyter Notebook 1 Updated Aug 9, 2023

  • evals Public

    Forked from openai/evals

    Evals is a framework for evaluating LLMs and LLM systems, and an open-source registry of benchmarks.

    Python MIT License Updated Aug 9, 2023

  • GMOdetectoR Public

    R 2 Updated Oct 17, 2022

  • rslurm Public

    Forked from earthlab/rslurm

    Submit R code to a Slurm cluster

    R Updated Nov 17, 2020

  • AgroCulture Public

    AgroCulture

    R Updated Aug 7, 2019

  • dpl_u19 Public

    Forked from oneilsh/dpl_u19

    Deep Learning for Life Scientists Pilot

    HTML Updated Aug 1, 2019

  • Pheno_odk_test Public

    Forked from cmungall/Pheno_odk_test

    A test repo demonstrating design pattern -based phenotype ontology development using the Ontology Development Kit

    Makefile Updated Aug 7, 2018

  • TensorFlow-Examples Public

    Forked from aymericdamien/TensorFlow-Examples

    TensorFlow Tutorial and Examples for Beginners with Latest APIs

    Jupyter Notebook Other Updated Jul 31, 2018