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Merge branch 'master' of https://github.com/ctjoe/softcite-dataset in…
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jlcohoon committed Oct 9, 2017
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@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .

@prefix ca: <http://floss.syr.edu/ontologies/2008/4/contentAnalysis.owl#> .
@prefix doap: <http://usefulinc.com/ns/doap#> .
@prefix vivo: <http://vivoweb.org/ontology/core#> .

@prefix bioj: <http://james.howison.name/ontologies/bio-journal-sample#> .
@prefix citec: <http://james.howison.name/ontologies/software-citation-coding#> .
@prefix bioj-cited: <http://james.howison.name/ontologies/bio-journal-sample-citation#> .
@prefix pmcid: <https://www.ncbi.nlm.nih.gov/pmc/articles/> .
@prefix pmcid-cited: <http://james.howison.name/ontologies/pmcid-journal-sample-citation#> .
@prefix dc: <http://dublincore.org/documents/2012/06/14/dcmi-terms/> .

# https://howisonlab.github.io/softcite-dataset/pdf-files/pmc_oa_files/PMC4162729.pdf
pmcid:PMC4162729 rdf:type bioj:article ;

citec:has_in_text_mention pmcid:PMC4162729_CT01 ; # name in text mention like pmcid:PMC3028497_JC01, no quotes
citec:has_in_text_mention pmcid:PMC4162729_CT02 ;
citec:has_in_text_mention pmcid:PMC4162729_CT03 ;

ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "ctjoe" ;
ca:appliesCode [ rdf:type citec:coded_no_in_text_mentions ;
citec:isPresent false; #true/false
] ;
] ;
.
pmcid:PMC4162729_CT01 rdf:type citec:in_text_mention ;
citec:full_quote """ We obtained data for this study using an Internet-based electronic evaluation tool, E*Value""" ; # use triple quotes

citec:on_pdf_page 3 ; # integer

citec:spans_pages false ; # true/false

ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "ctjoe" ;
ca:appliesCode [ rdf:type citec:mention_type ;
rdfs:label """software""" ; # put one in triple quotes
ca:certainty 10; # integer
ca:memo """Mentioned as an intenet-based tool. Googled it and found that it is a medical software tool""" ; # use triple quotes
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "ctjoe" ;
ca:appliesCode [ rdf:type citec:software_was_used ;
citec:isPresent true; # true/false
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "ctjoe" ;
ca:appliesCode [ rdf:type citec:software_name ;
citec:isPresent true ; # true/false
rdfs:label """E*Value""" ; # use triple quotes
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "ctjoe" ;
ca:appliesCode [ rdf:type citec:version_number ;
citec:isPresent false; # true/false
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "ctjoe" ;
ca:appliesCode [ rdf:type citec:version_date ;
citec:isPresent false; # true/false
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "ctjoe" ;
ca:appliesCode [ rdf:type citec:url ;
citec:isPresent false ; # true/false
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "ctjoe" ;
ca:appliesCode [ rdf:type citec:creator ;
citec:isPresent false ; # true/false

] ;
] ;
.
pmcid:PMC4162729_CT02 rdf:type citec:in_text_mention ;
citec:full_quote """reporting function available through the study site’s electronic patient tracking system FirstNet """ ; # use triple quotes

citec:on_pdf_page 3 ; # integer

citec:spans_pages false; # true/false

ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "ctjoe" ;
ca:appliesCode [ rdf:type citec:mention_type ;
rdfs:label """software""" ; # put one in triple quotes
ca:certainty 9; # integer
ca:memo """Looked up online and found that it is a type of emegergency information system used in the healthcare industry """ ; # use triple quotes
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "ctjoe" ;
ca:appliesCode [ rdf:type citec:software_was_used ;
citec:isPresent true; # true/false
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "ctjoe" ;
ca:appliesCode [ rdf:type citec:software_name ;
citec:isPresent true ; # true/false
rdfs:label """FirstNet""" ; # use triple quotes
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "ctjoe" ;
ca:appliesCode [ rdf:type citec:version_number ;
citec:isPresent false ; # true/false
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "ctjoe" ;
ca:appliesCode [ rdf:type citec:version_date ;
citec:isPresent false; # true/false
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "ctjoe" ;
ca:appliesCode [ rdf:type citec:url ;
citec:isPresent false ; # true/false
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "ctjoe" ;
ca:appliesCode [ rdf:type citec:creator ;
citec:isPresent true ; # true/false
rdfs:label """Cerner""" ; # use triple quotes
] ;
] ;
.
pmcid:PMC4162729_CT03 rdf:type citec:in_text_mention ; # use in text mention name
citec:full_quote """Resident work hours were retrieved via an electronic physician shift scheduling software OnCall"""; # use triple quotes

citec:on_pdf_page 3 ; # integer

citec:spans_pages false ; # true/false

ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "ctjoe" ;
ca:appliesCode [ rdf:type citec:mention_type ;
rdfs:label """software""" ; # put one in triple quotes
ca:certainty 10 ; # integer
ca:memo """Mentioned in text that it is a software""" ; # use triple quotes
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "ctjoe" ;
ca:appliesCode [ rdf:type citec:software_was_used ;
citec:isPresent true; # true/false
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "ctjoe" ;
ca:appliesCode [ rdf:type citec:software_name ;
citec:isPresent true; # true/false
rdfs:label """OnCall""" ; # use triple quotes
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "ctjoe" ;
ca:appliesCode [ rdf:type citec:version_number ;
citec:isPresent false ; # true/false
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "ctjoe" ;
ca:appliesCode [ rdf:type citec:version_date ;
citec:isPresent false ; # true/false
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "ctjoe" ;
ca:appliesCode [ rdf:type citec:url ;
citec:isPresent false ; # true/false
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "ctjoe" ;
ca:appliesCode [ rdf:type citec:creator ;
citec:isPresent true ; # true/false
rdfs:label """Spiral Software"""; # use triple quotes
] ;
] ;
.

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