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Issues list

Better handling of Sample object serialization to yaml bug
#1 by afrendeiro was closed May 31, 2016
derived columns and merge tables bug
#25 by nsheff was closed Feb 13, 2017
0.4-rc2 fails for looper_args pipelines bug priority-high
#41 by nsheff was closed Feb 17, 2017
@nsheff
Logger setup assigns null value to module-scoped logger. bug priority-high
#44 by vreuter was closed Feb 17, 2017
1
@vreuter
simplifying and clarifying sample child classes enhancement - users
#56 by nsheff was closed May 29, 2019
auto-update usage docs? docs
#73 by nsheff was closed Jul 13, 2017 0.6
subprojects broken bug
#118 by nsheff was closed Jun 6, 2017 0.6
pipeline interface path variable should accept environment variables
#139 by nsheff was closed Jun 30, 2017 0.6
Explicit CLI option names enhancement - devs
#146 by vreuter was closed Jul 13, 2017 0.6
@vreuter
Document Sample subclass declaration and use docs
#147 by vreuter was closed Jul 13, 2017 0.6
@vreuter
Change merge_table to sample_subannotation
#203 by nsheff was closed Dec 21, 2017
@vreuter
numexpr hard coded version
#211 by nsheff was closed Jun 29, 2018
interactive tests fail
#212 by nsheff was closed Jun 19, 2018
allow missing annotation file priority-high
#224 by nsheff was closed Feb 15, 2019 0.19
@stolarczyk
Rename _columns to _attributes priority-high
#226 by vreuter was closed Jan 16, 2019 0.19
@vreuter
activate subproject function enhancement - users priority-high
#229 by nsheff was closed Feb 15, 2019 0.19
@stolarczyk
Migrate docs from reST to Markdown docs priority-medium
#239 by vreuter was closed Apr 17, 2019 0.20
@vreuter
Fix subproject activation
#249 by vreuter was closed Feb 18, 2019
Parsing single-column sheet
#276 by vreuter was closed Apr 30, 2019
missing column error message is confusing
#282 by nsheff was closed Apr 17, 2019
@nsheff
Snakemake object
#286 by nsheff was closed May 2, 2019
@vreuter
SnakeProject tests testing
#294 by vreuter was closed Jun 7, 2019
@vreuter
Project repr updates enhancement - devs enhancement - users
#296 by vreuter was closed Jun 4, 2019
6 tasks done
0.22
@vreuter
Ensure string type for subsample/units
#297 by vreuter was closed May 2, 2019 0.22
@vreuter
Match status of constants to pepr
#302 by vreuter was closed Jun 7, 2019
@vreuter
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