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Issues list

Make PEP representations consistent
#493 by donaldcampbelljr was closed Sep 10, 2024
3 tasks
1
Rename CONSTANT_KEY to APPEND_KEY likely-solved
#480 by donaldcampbelljr was closed Jul 17, 2024
1
@khoroshevskyi
Tests directory incorrectly included in package installation likely-solved
#478 by jlumpe was closed May 28, 2024
5
Metadata standardization models
#477 by nsheff was closed May 17, 2024
@saanikat
2
peppy creates projects with no sample name column bug likely-solved
#476 by nsheff was closed Jul 17, 2024 v0.41.0
1
@khoroshevskyi
3
add __eq__ method to peppy.Sample likely-solved
#471 by khoroshevskyi was closed Jul 17, 2024 v0.41.0
1
@khoroshevskyi
Env variables in config file are not expanding bug likely-solved
#464 by donaldcampbelljr was closed Dec 18, 2023
@khoroshevskyi
2
Cannot access pep.config.output_dir, must use pep.config["output_dir"] likely-solved question
#463 by donaldcampbelljr was closed Dec 18, 2023
@donaldcampbelljr
4
should it be easy to create a peppy.Project from a pandas dataframe? enhancement - users likely-solved question
#461 by donaldcampbelljr was closed Dec 18, 2023
4
peppy.Project didn't have a clear way to create the project from csv, either, once I had that likely-solved
#460 by donaldcampbelljr was closed Jul 11, 2024 v0.50.0
2
the project missing sample_name, but with sample_table_index set correctly, cannot run in looper bug
#459 by donaldcampbelljr was closed May 28, 2024
9
Make a peppy.Project from a sample yaml file likely-solved
#458 by donaldcampbelljr was closed Dec 18, 2023
3
Streamlining user interface
#457 by nsheff was closed Dec 18, 2023
5 of 6 tasks
2
Add pickling (serializing an object) to Project brainstorming likely-solved
#455 by khoroshevskyi was closed Dec 18, 2023
@nsheff @khoroshevskyi
1
Add test that will check if pickling works well likely-solved
#454 by khoroshevskyi was closed Dec 18, 2023
@khoroshevskyi
from_dict method does not set correctly sample and subsample indexes
#452 by khoroshevskyi was closed Jul 19, 2023
1
@khoroshevskyi
Add orient argument to to_dict method
#449 by khoroshevskyi was closed Jun 30, 2023
1
@khoroshevskyi
Remove attmap dependency likely-solved
#447 by nsheff was closed Dec 18, 2023
@khoroshevskyi
7
If 'annotation_sheet.csv' is without samples, throws 'NoneType' error
#444 by ayobi was closed Jul 19, 2023
Change from_dict() and from_pandas() from instance method to class method. brainstorming
#443 by khoroshevskyi was closed Dec 18, 2023
@nsheff @vreuter
to_dict(extended=True) is producing dict with incorrect key name subsample_dict
#442 by khoroshevskyi was closed Jun 30, 2023
@khoroshevskyi
Add functionality that supports non private keys in dictionary in from_dict fucntion
#437 by khoroshevskyi was closed Apr 5, 2023
1
Performance idea: find duplicate samples more efficiently priority-high
#436 by nsheff was closed Mar 27, 2023
@nsheff
2
sample_modifiers applied to subsamples
#435 by johnyaku was closed Mar 28, 2023
12
Imports: documentation unclear
#434 by johnyaku was closed Mar 14, 2023
2
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