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CrossMap Public
Forked from liguowang/CrossMapCrossMap is a python program to lift over genome coordinates from one genome version to another.
Python Other UpdatedJul 24, 2024 -
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Winnowmap Public
Forked from marbl/WinnowmapLong read / genome alignment software
C Other UpdatedApr 26, 2024 -
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meryl Public
Forked from marbl/merylA genomic k-mer counter (and sequence utility) with nice features.
C UpdatedMar 24, 2023 -
merqury Public
Forked from marbl/merquryk-mer based assembly evaluation
Shell Other UpdatedDec 16, 2022 -
vgp-metadata Public
Forked from VGP/vgp-metadataVGP repository for the metadata associated with the samples and data
Other UpdatedApr 12, 2022 -
SALSA Public
Forked from marbl/SALSASALSA: A tool to scaffold long read assemblies with Hi-C data
Python MIT License UpdatedApr 8, 2022 -
msmc-slurmPipeline Public
A pipeline for running MSMC on a SLURM-controlled Linux cluster
Shell MIT License UpdatedMar 14, 2022 -
sam2covWig Public
Create coverage Wiggle tracks from SAM-formatted alignments
Python Creative Commons Zero v1.0 Universal UpdatedMar 2, 2022 -
training-material Public
Forked from galaxyproject/training-materialA collection of Galaxy-related training material
HTML MIT License UpdatedMar 1, 2022 -
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Misc. scripts referenced in my genome assembly paper for Albula glossodonta
Python MIT License UpdatedSep 19, 2021 -
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giab_data_indexes Public
Forked from genome-in-a-bottle/giab_data_indexesThis repository contains data indexes from NIST's Genome in a Bottle project.
Roff UpdatedJul 27, 2021 -
homebrew-cask Public
Forked from Homebrew/homebrew-cask🍻 A CLI workflow for the administration of macOS applications distributed as binaries
Ruby BSD 2-Clause "Simplified" License UpdatedJul 24, 2021 -
hpgp-data Public
Forked from human-pangenomics/hpgp-dataData from the Human PanGenomics Project
Other UpdatedJul 15, 2021 -
vgp-assembly Public
Forked from VGP/vgp-assemblyVGP repository for the genome assembly working group
Shell Other UpdatedJun 14, 2021 -
V3D2FNOVA Public
Prepare Visual 3D (V3D) data for FNOVA at UNC-CH
Python MIT License UpdatedApr 6, 2021 -
A simple set of scripts to align PacBio reads to a reference using Minimap2 on a SLURM-controlled cluster
Shell MIT License UpdatedFeb 20, 2021 -
SLURM pipeline for creating mappability masks with SNPable
Shell MIT License UpdatedFeb 20, 2021 -
basicAsmStatsCalcInPy Public
Calculate continuity statistics for a genome assembly
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Kmer-SSR Public
Forked from ridgelab/Kmer-SSRFast, Accurate, and Complete SSR Detection in Genomic Sequences
C++ UpdatedJun 29, 2020 -
toggleHiddenFilesMacOS Public archive
Turn on/off viewing hidden files in macOS Finder
MIT License UpdatedNov 5, 2019 -
openDirInTerminalMacOS Public
From Finder, open a directory in iTerm2 on macOS
MIT License UpdatedNov 5, 2019 -
WDMyCloudBackup Public
automatic backup using cron and usb_backup
Shell MIT License UpdatedAug 22, 2019 -
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MendeleyEndnoteTools Public
Tools for Using Mendeley with Endnote
Shell MIT License UpdatedFeb 5, 2018 -
vimPractice Public
Practice exercises for an introductory Vim lecture
Shell MIT License UpdatedSep 12, 2017 -
geneSynthesizer Public
Design primers for "single-pot" PCR gene synthesis