Programmable completion functions for bash

order a FASTA file by microchromosome specific genes

NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.

implicit pangenome graph

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

The VGP Phase I assembly manuscript repo

Workflow to identify the centromere dip regions (CDR) from methyl BAMs

BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy while reducing the memory space usage of two important appl…

Reference implementations of minimizer schemes to go with the mod-minimizers paper.

A collection of minimizer-based sampling algorithms.

Documentation and tutorials on using AWS for biomedical research

Documentation and tutorials on using GCP for biomedical research

BWT construction and search

A repository to conduct experiments with omnitig-related models for genome assembly.

Data intensive science for everyone.

PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.

CrossMap is a python program to lift over genome coordinates from one genome version to another.

Whole Genome Alignment Tools

Earl Grey: A fully automated TE curation and annotation pipeline

Transformer-based sequence correction method for genome assembly polishing

Materials for EN.601.449/649 Computational Genomics: Applied Comparative Genomics

Applied Computational Genomics Course at UU: Spring 2020

SEACR: Sparse Enrichment Analysis for CUT&RUN

Color Schemes based around artwork and the Museum of Modern Art.

munsell colour system for R